Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_M02
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.41 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.94 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   1.6  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    26   8.7  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 242 VRVHRANTGRSSNELDRQTTELERR 316
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 896 PXPTXHXPPXXPPPXNPHXXYPXPXPTPTP 807
           P P    PP  PPP       P P P P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 863 PPPXNPHXXYPXPXPTPTPXHP 798
           PPP  P    P P P P P  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP 753


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 166 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 68
           Y    ES + D+ +  SH+ A +I Q  R+G R
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = -2

Query: 902 NRPXPTXHXPPXXPPPXNPHXXYPXPXPTPTPXHPXRXT 786
           N P P    P   P P  P    P P   P P  P   T
Sbjct: 111 NEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVPET 149


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -2

Query: 875 PPXXPPPXNPHXXYPXPXPTPTPXHP 798
           PP  PPP  P   +  P   P P  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 48   MSTTYIILLPFLLTCAIASAAECENATSLS 137
            +S TYIILLPF   C     A  +++  +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,153
Number of Sequences: 5004
Number of extensions: 45729
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)