Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L20
         (821 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.                 30   8.8  
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ...    30   8.8  
X13783-1|CAA32030.1|  714|Homo sapiens alpha-1 type 2 collagen (...    30   8.8  
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ...    30   8.8  
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph...    30   8.8  

>X16711-1|CAA34683.1| 1160|Homo sapiens COL2A1 protein.
          Length = 1160

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 40  PSGFRGIPGPPG 5
           PSGF+G+PGPPG
Sbjct: 592 PSGFQGLPGPPG 603


>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
           alpha-1 type II collagen. ).
          Length = 1418

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 40  PSGFRGIPGPPG 5
           PSGF+G+PGPPG
Sbjct: 592 PSGFQGLPGPPG 603


>X13783-1|CAA32030.1|  714|Homo sapiens alpha-1 type 2 collagen (714
           AA) protein.
          Length = 714

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 40  PSGFRGIPGPPG 5
           PSGF+G+PGPPG
Sbjct: 161 PSGFQGLPGPPG 172


>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
           protein.
          Length = 1487

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 40  PSGFRGIPGPPG 5
           PSGF+G+PGPPG
Sbjct: 661 PSGFQGLPGPPG 672


>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
           (primary osteoarthritis, spondyloepiphyseal dysplasi
           protein.
          Length = 1487

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 40  PSGFRGIPGPPG 5
           PSGF+G+PGPPG
Sbjct: 661 PSGFQGLPGPPG 672


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,568,077
Number of Sequences: 237096
Number of extensions: 1272311
Number of successful extensions: 39548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19436
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)