Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L19
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.13 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.8  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 492 PPRXGXXXXPPPPPXFXLXXKTXPPPPXG 578
           PP  G    PPPPP F    +  PPPP G
Sbjct: 5   PP--GNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 476 PPGGXPPPXGXXXSSPPPPXFXFXKXNXPPPPGGXG 583
           PPG  PPP       PPPP F     + PPPP   G
Sbjct: 5   PPGNPPPP-------PPPPGFE--PPSQPPPPPPPG 31


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +3

Query: 423 PPPAXPFSXXPFFFFXEXXRGGXPPRXGXXXXPPPPPXFXLXXKTXPPPP 572
           PPP  P    P             P  G    PPPPP         PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 482 GGXPPPXGXXXSSPPPPXFXFXKXNXPPPP 571
           GG PPP       PPPP   F K +  P P
Sbjct: 303 GGLPPPP-----PPPPPSNDFWKDSNEPAP 327


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/76 (25%), Positives = 22/76 (28%)
 Frame = +2

Query: 422 PPPRXXLFXXXVFFFFXXPPGGXPPPXGXXXSSPPPPXFXFXKXNXPPPPGGXGXXXXXL 601
           PPP   +    +      PP   PPP        PP        + PPPP          
Sbjct: 293 PPPSSRVSAAALAANKKRPP--PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGS 350

Query: 602 XXXXXXXRXKXPPPLP 649
                  R   PPP P
Sbjct: 351 IPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,207
Number of Sequences: 5004
Number of extensions: 31988
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)