Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L18
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    24   3.7  
05_04_0011 + 17139322-17139451,17139552-17140174                       24   5.1  
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060     28   9.3  

>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 23.8 bits (49), Expect(2) = 3.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 526 PPPPPPP 506
           PPPPPPP
Sbjct: 52  PPPPPPP 58



 Score = 23.8 bits (49), Expect(2) = 3.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 523 PPPPPPXXXXXXGGA 479
           PPPPPP      GG+
Sbjct: 64  PPPPPPARSGGGGGS 78


>05_04_0011 + 17139322-17139451,17139552-17140174
          Length = 250

 Score = 23.8 bits (49), Expect(2) = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 526 PPPPPPP 506
           PPPPPPP
Sbjct: 67  PPPPPPP 73



 Score = 23.4 bits (48), Expect(2) = 5.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 523 PPPPPPXXXXXXGG 482
           PPPPPP      GG
Sbjct: 103 PPPPPPPPSPPNGG 116


>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
          Length = 794

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 526 PPPPPPPXXXXXXGGA 479
           PPPPPPP      GGA
Sbjct: 11  PPPPPPPPFGRGGGGA 26


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,621,183
Number of Sequences: 37544
Number of extensions: 232621
Number of successful extensions: 9985
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8513
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)