Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L16
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.48 
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   6.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.9  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   7.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 208 VRVHRADTGRSSNELDRQTTELERR 282
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 277 VPTQSFVDPIHLKICQYPHGGL 212
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 756 GGXXXGXPXGNXGPGPPGXXAXGGF 682
           GG   G   G+ GP PPG    GGF
Sbjct: 187 GGGFGGFGGGSGGP-PPGPGGFGGF 210


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 426 KRLDISTPISMQLDSWPNDMQTCTFKFGSRMHNS 527
           K LD S+  SM+++SW N       +  SR+H S
Sbjct: 162 KFLDKSSG-SMEIESWDNSTSDSIIESSSRLHES 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,218
Number of Sequences: 5004
Number of extensions: 64783
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)