Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L14
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    30   0.19 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.22 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.24 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.35 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.7  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 729 PPPPPPPPXXXXGGGG 682
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 671 PPPPPPPPXXXXGGGG 718
           PPPPPPPP      GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 27.1 bits (57), Expect(2) = 0.19
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 726 PPPPPPPXXXXGGGGG 679
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 674 PPPPPPPXXXXGGGGG 721
           PPPPPPP       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.8 bits (49), Expect(2) = 0.91
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 676 PPPPPPXXXXXGGGGG 723
           PPPPPP        GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 23.4 bits (48), Expect(2) = 0.91
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 670 PPPPPPPP 693
           P PPPPPP
Sbjct: 905 PTPPPPPP 912



 Score = 22.6 bits (46), Expect(2) = 0.19
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 729 PPPPPPPP 706
           PPPPPP P
Sbjct: 907 PPPPPPLP 914


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 661 GXXPPPPPPPPXXXXXGG 714
           G  PPPPPPPP     GG
Sbjct: 772 GAGPPPPPPPPPAVSAGG 789



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 729 PPPPPPPPXXXXGGG 685
           PPPPPPPP     GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 729 PPPPPPPPXXXXGG 688
           PPPPPPPP     G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 671 PPPPPPPPXXXXGG 712
           PPPPPPPP     G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 726 PPPPPPPXXXXGGG 685
           PPPPPPP    G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 674 PPPPPPPXXXXGGG 715
           PPPPPPP    G G
Sbjct: 761 PPPPPPPPGVAGAG 774



 Score = 27.1 bits (57), Expect(2) = 0.55
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 726 PPPPPPPXXXXGGGG 682
           PPPPPPP      GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 674 PPPPPPPXXXXGGGG 718
           PPPPPPP      GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 25.4 bits (53), Expect(2) = 0.25
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 661 GXXPPPPPPP 690
           G  PPPPPPP
Sbjct: 759 GGPPPPPPPP 768



 Score = 23.8 bits (49), Expect(2) = 0.25
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 676 PPPPPPXXXXXGGGG 720
           PPPPPP       GG
Sbjct: 775 PPPPPPPPPAVSAGG 789



 Score = 21.0 bits (42), Expect(2) = 0.55
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 729 PPPPPP 712
           PPPPPP
Sbjct: 732 PPPPPP 737


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 729 PPPPPPPP 706
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 670 PPPPPPPP 693
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 25.4 bits (53), Expect(2) = 0.24
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 661 GXXPPPPPPP 690
           G  PPPPPPP
Sbjct: 7   GNPPPPPPPP 16



 Score = 23.8 bits (49), Expect(2) = 0.24
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 673 PPPPPPP 693
           PPPPPPP
Sbjct: 24  PPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect(2) = 0.35
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 674 PPPPPPPXXXXGG 712
           PPPPPPP     G
Sbjct: 337 PPPPPPPRSNAAG 349



 Score = 24.2 bits (50), Expect(2) = 0.35
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +2

Query: 629 GXPXXXXXXXXXXXPPPPPPP 691
           G P           PPPPPPP
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPP 343


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 661 GXXPPPPPPPP 693
           G  PPPPPPPP
Sbjct: 303 GGLPPPPPPPP 313



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 661 GXXPPPPPPPP 693
           G  PPPPPPPP
Sbjct: 304 GLPPPPPPPPP 314



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 730 PPPPPPPP 707
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 729 PPPPPPPP 706
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 730 PPPPPPPP 707
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 670 PPPPPPPP 693
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 730 PPPPPPPP 707
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671 PPPPPPPP 694
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 729  PPPPPPPP 706
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 670  PPPPPPPP 693
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 730 PPPPPPPP 707
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 671 PPPPPPPP 694
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,858
Number of Sequences: 5004
Number of extensions: 24896
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)