Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L12
         (1229 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    40   7e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    39   0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.061
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    28   3.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   3.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.0  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   7.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +2

Query: 575 PPPPPPPPXXXGGXXXXXPPPPP 643
           PPPPPPPP   G      PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +2

Query: 578 PPPPPPPXXXGGXXXXXPPPPPP 646
           PPPPPPP    G     PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.5 bits (68), Expect = 0.25
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 574 PPPPPPPPXXXXGXXKXXPPPP 639
           PPPPPPPP    G  +   P P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAP 797



 Score = 30.3 bits (65), Expect = 0.57
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = +2

Query: 575 PPPPPPPPXXXGGXXXXXPPPPPPXXG 655
           P P PPP    GG     PPPPPP  G
Sbjct: 748 PIPVPPPAPIMGG-----PPPPPPPPG 769



 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = +2

Query: 575 PPPPPPPP--XXXGGXXXXXPPP 637
           PPPPPPPP     GG     P P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 23.4 bits (48), Expect(2) = 2.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 541 PXPPPPPP 518
           P PPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 535 PPPPPPXXKKXXXGG 491
           PPPPPP       GG
Sbjct: 775 PPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +2

Query: 575 PPPPPPPPXXXGGXXXXXPPPPPPXXGXXXKKK 673
           PPPPPPPP    G      PPPPP  G   K+K
Sbjct: 9   PPPPPPPP----GFEPPSQPPPPPPPGYVKKRK 37



 Score = 21.8 bits (44), Expect(3) = 1.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 565 FXXPPPPPPPP 597
           F  P  PPPPP
Sbjct: 18  FEPPSQPPPPP 28



 Score = 21.8 bits (44), Expect(3) = 1.8
 Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
 Frame = +1

Query: 574 PP--PPPPPPXXXXGXXKXXPP 633
           PP  PPPPPP       K   P
Sbjct: 20  PPSQPPPPPPPGYVKKRKNKTP 41



 Score = 21.0 bits (42), Expect(3) = 1.8
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +1

Query: 469 PXXXXPPPPPXXF 507
           P    PPPPP  F
Sbjct: 6   PGNPPPPPPPPGF 18


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.061
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
 Frame = +2

Query: 575 PPPPPP-------PPXXXGGXXXXXPPPPPP 646
           PPPPPP       PP   G      PPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 31.5 bits (68), Expect = 0.25
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
 Frame = +2

Query: 575 PPPPPPPPXXXGGXXXXXP-----PPPPP 646
           PPPPPPP     G     P     PPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 574 PPPPPPPPXXXXGXXKXXPPP 636
           PPPPPPPP          P P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 574 PPPPPPPPXXXXGXXKXXPPPPPPXXG 654
           PPPPPPPP           P P    G
Sbjct: 306 PPPPPPPPPSNDFWKDSNEPAPADNKG 332


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 574  PPPPPPPPXXXXGXXKXXPP 633
            PPPPPPPP       K   P
Sbjct: 946  PPPPPPPPLVSAAGGKFVSP 965



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 574 PPPPPPPP 597
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 566  FXXPPPPPPPPXXXGGXXXXXP 631
            F  PPPPPPP     G     P
Sbjct: 944  FPPPPPPPPPLVSAAGGKFVSP 965


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 575  PPPPPPPPXXXGGXXXXXPPPPPP 646
            PPPP  PP   G      PPPP P
Sbjct: 1715 PPPPSAPPMPAG--PPSAPPPPLP 1736



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
 Frame = +1

Query: 574  PPPPP---PPPXXXXGXXKXXPPPPPP 645
            PPPPP   PPP          P  PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 652 PXGGGGGGGXXXXPPXXXXGGGGGGGG 572
           P G GGG G     P    GG GG GG
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 643 GGGGGGXXXXPPXXXXGGGGGGGG 572
           GGG GG    P     G GG GGG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGG 250


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 574 PPPPPPPPXXXXGXXKXXP 630
           PPPPPPPP       K  P
Sbjct: 370 PPPPPPPPELLNHSPKSRP 388


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 566 FXXPPPPPPPP 598
           +  PPPPPPPP
Sbjct: 187 YNPPPPPPPPP 197


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 575  PPPPPPPP 598
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 580 PPPPPPXXXXGXXKXXPPPPPPXXG 654
           PPPPP             PPPP  G
Sbjct: 908 PPPPPTASMTASAPAIASPPPPKVG 932


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.156    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,511
Number of Sequences: 5004
Number of extensions: 30179
Number of successful extensions: 489
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)