Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L12
         (1229 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.023
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect(2) = 0.023
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 574  PPPPPPPP 597
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 578  PPPPPPPXXXG 610
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 550  KKXPXPPPPPP 518
            ++ P PPPPPP
Sbjct: 1352 QQQPPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 627  PPPPPPP 647
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 627  PPPPPPP 647
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 627  PPPPPPPXG 653
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 22.6 bits (46), Expect(2) = 0.023
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 628  PPPPPPXXG 654
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 581  PPPPPPXXXGG 613
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 575 PPPPPPPPXXXG 610
           P PPPPPP   G
Sbjct: 341 PAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 541 PXPPPPPP 518
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 619 KXXPPPPPP 645
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 574  PPPPPPPP 597
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 541  PXPPPPPP 518
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.156    0.564 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,082
Number of Sequences: 438
Number of extensions: 6443
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41901987
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)