Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L09
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    35   0.017
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    29   1.1  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    28   1.4  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    28   1.9  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    27   4.4  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
 Frame = +3

Query: 444 CTCPEPLVLRRGHCVEPTCSPACDSYSSCTDFNVCTCVNNTIALNGS--QCAPVCPDGYY 617
           C  P PL+   G C  P C+   + +  C   ++    +N   +N    +C  VC +   
Sbjct: 290 CEHPCPLLCHPGPC--PPCTATVEKFCLCGKESIHARCSNISKVNTEPFRCENVCDELLP 347

Query: 618 NDPVECSPRCERCVNGTCTEPGLCTCDSG 704
                C  RC   + G C EP    C  G
Sbjct: 348 CGEHTCKKRCHSGLCGACFEPINAKCYCG 376


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 88  LCKRSRRNANIELCCVEMFYQFCYSSSANDHCFVMP 195
           LCK+  RNA    CC ++F + C  ++  D  F  P
Sbjct: 284 LCKKLARNACRTPCCDKLFCEECIQTALLDSDFECP 319


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 226 STVATPFPSFMASQNNDHSPMTNNRTDKTFPHSIALCSRSDAIV 95
           S + T   S     + DH P+T   +D ++P  +AL S +DA +
Sbjct: 473 SDIVTRINSAFGDFSLDHLPVTILSSDLSYPQYLALLSVADAFI 516


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 654 CVNGT--CTEPGLCTCDSGYKNIDDVCVPQCLGLPQRRMRGSQ*LPLSRQL 800
           C+N T   TE  LC     Y+  D V VP+ L   Q  M G   LP +++L
Sbjct: 392 CLNSTLCATERALCCILENYQTPDGVNVPKVL---QPYMGGKTFLPFTKEL 439


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 445 HTSGASQVPFTHPLVHFGTQLSVFA-SYTQPVLHD*LFSMLTYDSV 311
           ++  ASQ P T+P  H   Q+S     Y  P L D   S+L  D +
Sbjct: 18  NSQNASQPPETYPFYHEVRQMSQHPWMYEDPELQDYALSILPLDKL 63


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/66 (21%), Positives = 26/66 (39%)
 Frame = +3

Query: 213 VATVDVPVIRQRTRLVYNKKRCRGKTNSGSCVITESYVSIEKSQSCKTGWVYEAKTDSCV 392
           V + +   +R  T + Y    C+    +G C   ++   +   +  K GW  + + DS  
Sbjct: 169 VLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQ 228

Query: 393 PKCTSG 410
            K   G
Sbjct: 229 EKYKKG 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,886
Number of Sequences: 5004
Number of extensions: 62534
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)