Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L06
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   298   4e-81
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   289   2e-78
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    30   2.0  
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   6.1  
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.1  
06_03_0543 + 21967787-21970261                                         29   6.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  298 bits (731), Expect = 4e-81
 Identities = 139/244 (56%), Positives = 177/244 (72%)
 Frame = +3

Query: 51  ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 230
           ++A   G    L+  E+DV  MLAA  HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60

Query: 231 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 410
           KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 411 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 590
            EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180

Query: 591 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVVQLTRRXSPVMKLE 770
           LLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++A  Q    +T   +P     
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQDFAAITDYTAPEQWSA 240

Query: 771 *TWT 782
             WT
Sbjct: 241 DQWT 244


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  289 bits (709), Expect = 2e-78
 Identities = 134/216 (62%), Positives = 167/216 (77%)
 Frame = +3

Query: 84  LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 263
           L+  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71

Query: 264 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 443
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131

Query: 444 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 623
             DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191

Query: 624 VLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVV 731
            +    +WDV+VDLFFYRDPEE++  EQ+ +E A+V
Sbjct: 192 TILPGHKWDVMVDLFFYRDPEEAK--EQEEEEAALV 225


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -3

Query: 333 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SRGYHQHVVC 178
           + SV + D+  ++  RT  RGS  L    QPE + PRY+    R  H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 151  TFSAPRWVVAASILVTSSSLRASTSNP 71
            TF A RWV+AA   V  + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 329 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 436
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 579 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 668
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,407,617
Number of Sequences: 37544
Number of extensions: 607387
Number of successful extensions: 1608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)