Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_L03
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 32 0.49
07_01_0373 + 2783596-2784933 31 0.86
03_05_0898 + 28610123-28610203,28611190-28611271,28611666-286117... 29 3.5
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.5
04_01_0041 - 464695-464850,467485-469029 29 6.1
02_05_0158 - 26362259-26362695,26363732-26363903 29 6.1
01_05_0227 - 19512866-19514983 29 6.1
04_03_0806 + 19857675-19859135 28 8.0
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 28 8.0
03_04_0191 - 18293842-18294273 28 8.0
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.0
01_01_0046 - 331758-332627 28 8.0
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 32.3 bits (70), Expect = 0.49
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 543 LAISATSTRSSNPRFHTPTTP 605
+A S+T+TR S PR H PTTP
Sbjct: 1 MAASSTATRLSPPRLHAPTTP 21
>07_01_0373 + 2783596-2784933
Length = 445
Score = 31.5 bits (68), Expect = 0.86
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -2
Query: 92 EEEKALTKEGMAEAAETXKGTISSMNRS 9
E+++ LTK G + +ET KG++ S++RS
Sbjct: 151 EQQQQLTKSGCSSTSETSKGSVLSLSRS 178
>03_05_0898 +
28610123-28610203,28611190-28611271,28611666-28611721,
28612253-28612366,28612484-28612546,28612633-28612752,
28612850-28612950,28613097-28613156,28613243-28613342,
28613421-28613575,28613661-28613756,28614269-28614403,
28614510-28614573,28614648-28614729,28615038-28615213,
28615302-28615378,28615637-28615769,28615939-28616055,
28616394-28616398,28616564-28616684,28616711-28617751
Length = 992
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +2
Query: 575 KSPIPYTNHPRLNIHFHQSPERRTKKEFAPGLKPPVVIRGSISVSHPLVTGHG*RGFA 748
K PI R +F+ +PE EF P PV GSI+++ PL G+G G A
Sbjct: 821 KVPIRSIAACRGKFYFNATPESVGVLEFTPTPTTPVF--GSIAIADPLPGGYGVLGAA 876
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.5
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 456
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 457 VEGVNVLATPSSSRITIGGLALMHQ 531
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 420
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 421 TVD 429
+D
Sbjct: 100 PLD 102
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 519 PYASSHPPLAISATSTRSSNPRFHTP-TTPDLTS 617
P ASS PP + + +T SS+P TP +TPD T+
Sbjct: 132 PTASSSPP-STATPATPSSDPGMDTPSSTPDATT 164
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 461 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 369
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>04_03_0806 + 19857675-19859135
Length = 486
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 563 NPIIKSPIPYTNHPRLNIHFHQSPERR 643
NP + P PY + PRL +H H+ RR
Sbjct: 6 NPPLPLPPPYDSLPRLLLHHHRRLPRR 32
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 400 PSLKIPVTVDL--CWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPWRSR--LHQP 567
P KIP +++ C T+ D T ++ S+ +ITIG L L+ + WR R LH+P
Sbjct: 220 PGSKIPCNLEVSDCLTSHDGTSA-----SSSSNEKITIGLLFLLQKLCKNWRLRRFLHRP 274
>03_04_0191 - 18293842-18294273
Length = 143
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 525 ASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKXXXXXXXXXXXXXEAPSA 704
A+S LA++A +T + H P+ P I +PL+ ++ AP A
Sbjct: 4 AASTEALAVAAAATARAPQHHHIPSQPRWVVILYSPLHGMVAAAPPPPPPQFVKHFAPPA 63
Query: 705 YLTP 716
+TP
Sbjct: 64 PVTP 67
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +1
Query: 235 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 415 PVTVDLCWTTADVTVEGVNVLATPSS 492
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>01_01_0046 - 331758-332627
Length = 289
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 598 PPQT*HPFPSIP*TPY*KGVRAGVKASGCHQRLHQRISPP 717
PP + HP P+IP RA ++RLHQ+ PP
Sbjct: 42 PPSSRHPHPTIP------AARAAPPLGPTNRRLHQQPPPP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,599,217
Number of Sequences: 37544
Number of extensions: 532387
Number of successful extensions: 1408
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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