Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L02
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    95   1e-20
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    89   9e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    48   1e-06
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    36   0.007
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   9.5  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 41/63 (65%), Positives = 45/63 (71%)
 Frame = +2

Query: 125 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSXTGTGS 304
           MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFS TG G 
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 305 XYP 313
             P
Sbjct: 61  YVP 63



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 307 VPRAVFVDLXXTVVDXVPLGHXXXCFFP 390
           VPR+++VDL   V+D V  G     F P
Sbjct: 62  VPRSIYVDLEPNVIDQVRTGPYRDLFHP 89


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 88.6 bits (210), Expect = 9e-19
 Identities = 45/68 (66%), Positives = 47/68 (69%), Gaps = 5/68 (7%)
 Frame = +2

Query: 125 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSX 289
           MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFS 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 290 TGTGSXYP 313
           TG G   P
Sbjct: 60  TGQGKFVP 67



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 307 VPRAVFVDLXXTVVDXVPLGHXXXCFFP 390
           VPR+++VDL   V+D V  G     F P
Sbjct: 66  VPRSIYVDLEPNVIDQVRTGPYKDLFHP 93


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 21/42 (50%), Positives = 27/42 (64%)
 Frame = +2

Query: 128 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIG 253
           RE I++  GQ G QIG+  W+  CLEHGI PDG + +  T G
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEG 44


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 125 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSXTGTGS 304
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N +F+    G 
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 305 XYP 313
             P
Sbjct: 59  YVP 61



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 307 VPRAVFVDLXXTVVDXVPLGHXXXCFFPN 393
           VPRAV VDL    +D V  G     F P+
Sbjct: 60  VPRAVLVDLEPGTMDAVKSGKFGNLFRPD 88


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
 Frame = +1

Query: 535 PPPX---GGXPXPGXPPXXGGXFPPXXGXKXXXGXXPXPPXPXVSXXG 669
           PPP    GG P P  PP   G  PP           P PP P VS  G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP----------PPPPPPPAVSAGG 789


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/56 (30%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
 Frame = +1

Query: 487 PXXPXPXFPXXXGSXXPPPXGGXPXPGXPPXXG---GXFPPXXGXKXXXGXXPXPP 645
           P  P P      GS   PP G    P  PP      G  PP           P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPP 392


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 114 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMXRCP 236
           L+S        +L+ P SR++ P  S +  STASSL    P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,257
Number of Sequences: 5004
Number of extensions: 31431
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)