Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_L01
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   256   2e-68
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   253   2e-67
09_06_0103 + 20873310-20873382,20873530-20873735                       29   6.2  
01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313     29   6.2  
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    28   8.1  
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561...    28   8.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  256 bits (627), Expect = 2e-68
 Identities = 119/199 (59%), Positives = 148/199 (74%)
 Frame = +3

Query: 51  ISATMSGGLDVLALNEGDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 230
           ++A   G    L+  E DV  MLAA  HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60

Query: 231 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 410
           KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F
Sbjct: 61  KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 411 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 590
            EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180

Query: 591 LLAREVLRLRGVLPRDQRW 647
           LLAR VL++RG +    +W
Sbjct: 181 LLARMVLQMRGTILPGHKW 199


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  253 bits (619), Expect = 2e-67
 Identities = 116/188 (61%), Positives = 142/188 (75%)
 Frame = +3

Query: 84  LALNEGDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 263
           L+  E D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71

Query: 264 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 443
           IENP D+ V S+RP+GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72  IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131

Query: 444 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 623
             DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191

Query: 624 VLPRDQRW 647
            +    +W
Sbjct: 192 TILPGHKW 199


>09_06_0103 + 20873310-20873382,20873530-20873735
          Length = 92

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 329 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 436
           +CR+ RC  YC   G    RC +  DPS     ++ +C+
Sbjct: 45  LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83


>01_07_0115 - 41164227-41164452,41164515-41164601,41164757-41165313
          Length = 289

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 682 GXGRRTKSTXTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVL 551
           G GRR ++     RW       S  + R   H I P+ ++DL+L
Sbjct: 157 GRGRRRRAPTWHGRWKMWPPATSSGSGRGRYHPI-PVRYQDLIL 199


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 333 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 178
           + SV + D+  ++  RT  RGS  L    QPE + PRY+       H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319


>01_06_0902 +
           32853708-32853739,32854787-32855596,32856094-32856157,
           32856375-32856446
          Length = 325

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 158 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 265
           P   +C+ T C    C        K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,891,752
Number of Sequences: 37544
Number of extensions: 518385
Number of successful extensions: 1243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)