Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_K11
(880 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 4e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 48 9e-08
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 48 9e-08
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 48 1e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 48 2e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 46 5e-07
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 46 5e-07
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 46 5e-07
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 46 5e-07
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 46 5e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 45 1e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 45 1e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 44 1e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 43 3e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 43 4e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 42 7e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 2e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 40 3e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 34 0.002
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 33 0.003
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 25 1.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 24 2.1
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 23 2.8
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 4.9
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 8.6
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 49.6 bits (113), Expect = 4e-08
Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Frame = +1
Query: 94 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA---NIRESEST 252
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 253 VRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAAASTAG 405
+ L+ W D + W+ E+G T L V SE +W PD+VL N A G
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYG 118
Score = 27.1 bits (57), Expect = 0.23
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +2
Query: 407 TTLSAPVYLITAPISWIKRLDISTPISMQLDDWXNDMQTCTFKFGSRMHNSDEXD 571
TT++ + T + W + + + + D QTC KFGS ++ + D
Sbjct: 120 TTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGIQID 174
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 48.4 bits (110), Expect = 9e-08
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTA 402
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 403 GDYXLRARVSNNGSDL 450
G Y V++NGS L
Sbjct: 153 GTYQTNVVVTHNGSCL 168
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXDFV 577
D Q C KFGS ++ ++ D V
Sbjct: 189 DDQHCDMKFGSWTYDGNQVDLV 210
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 48.4 bits (110), Expect = 9e-08
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTA 402
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 403 GDYXLRARVSNNGSDL 450
G Y V++NGS L
Sbjct: 153 GTYQTNVVVTHNGSCL 168
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXDFV 577
D Q C KFGS ++ ++ D V
Sbjct: 189 DDQHCDMKFGSWTYDGNQVDLV 210
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 48.0 bits (109), Expect = 1e-07
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTA 402
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 403 GDYXLRARVSNNGSDL 450
G Y V++NGS L
Sbjct: 85 GTYQTSVVVTHNGSCL 100
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXDFV 577
D Q C KFGS ++ ++ D V
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLV 142
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 47.6 bits (108), Expect = 2e-07
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Frame = +1
Query: 112 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 276
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 277 MNWIDKRLSWNAGEW-GCGTWLVSSERLWRPDVVL 378
+ W L+W + E+ + V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
Score = 21.8 bits (44), Expect = 8.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +2
Query: 503 WXNDMQTCTFKFGSRMHNSDE 565
W D+ CT S H S+E
Sbjct: 166 WPYDILNCTIHIASWSHGSNE 186
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 46.0 bits (104), Expect = 5e-07
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTA 402
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 403 GDYXLRARVSNNGSDL 450
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXDFV 577
D Q C KFGS ++ ++ D V
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLV 142
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 46.0 bits (104), Expect = 5e-07
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTA 402
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 403 GDYXLRARVSNNGSDL 450
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXDFV 577
D Q C KFGS ++ ++ D V
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLV 142
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 46.0 bits (104), Expect = 5e-07
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTA 402
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 403 GDYXLRARVSNNGSDL 450
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXDFV 577
D Q C KFGS ++ ++ D V
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLV 142
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 46.0 bits (104), Expect = 5e-07
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTA 402
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 403 GDYXLRARVSNNGSDL 450
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXDFV 577
D Q C KFGS ++ ++ D V
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLV 142
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 46.0 bits (104), Expect = 5e-07
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 229 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTA 402
++ E + A L++ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 403 GDYXLRARVSNNGSDL 450
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXDFV 577
D Q C KFGS ++ ++ D V
Sbjct: 121 DDQHCDMKFGSWTYDGNQVDLV 142
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 44.8 bits (101), Expect = 1e-06
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Frame = +1
Query: 85 TCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRH---ANIRES 243
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 244 ESTVRIQADLQMNWIDKRLSWNAGEWG-CGTWLVSSERLWRPDVVLLNAA 390
T + ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 44.8 bits (101), Expect = 1e-06
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Frame = +1
Query: 91 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 255
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 256 RIQADLQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA-ASTAGDYXLRARV 429
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 430 SNNGSDL 450
NNG+ L
Sbjct: 131 KNNGTCL 137
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 44.4 bits (100), Expect = 1e-06
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +1
Query: 118 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 285
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 286 IDKRLSWNAGEWGCGTWLVSSERLWRPDVVLLNAAAS 396
+D+RL++ G+ + R+W+PD N S
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHS 98
Score = 25.4 bits (53), Expect = 0.70
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 446 ISWIKRLDISTPISMQLDDWXNDMQTCTFKFGS 544
+ + RL I M L+++ D Q C +FGS
Sbjct: 118 VLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 43.2 bits (97), Expect = 3e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +1
Query: 112 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAD 270
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 271 LQMNWIDKRLSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA 390
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 24.2 bits (50), Expect = 1.6
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +2
Query: 437 TAPISWIKRLDISTPISMQLDDWXNDMQTCTFKFGSRMHNSDEXD 571
T + W + + ++ + D QTC KFGS ++ + D
Sbjct: 134 TGRVEWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGFQVD 178
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 42.7 bits (96), Expect = 4e-06
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 190 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEWG-CGTWLVSSERLWR 363
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 364 PDVVLLNAAASTAGDYXLR 420
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
Score = 26.6 bits (56), Expect = 0.30
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +2
Query: 446 ISWIKRLDISTPISMQLDDWXNDMQTCTFKFGSRMHNSDE 565
+ W+ + ++ + + D QTC KFGS N D+
Sbjct: 139 VLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQ 178
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 41.9 bits (94), Expect = 7e-06
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +1
Query: 139 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQADLQMNWIDKR 297
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVW--VEQRWNDYK 94
Query: 298 LSWNAGEWGCGTWL-VSSERLWRPDVVLLNAA 390
L WN E+G L V SE +W PD+VL N A
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
Score = 27.1 bits (57), Expect = 0.23
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +2
Query: 407 TTLSAPVYLITAPISWIKRLDISTPISMQLDDWXNDMQTCTFKFGSRMHNSDEXD 571
T ++ T +SW + + ++ + D Q+C KFGS +N + D
Sbjct: 133 TLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYNGAQVD 187
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.3 bits (90), Expect = 2e-05
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +1
Query: 139 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 303
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 304 WNAGEWGCGTWL-VSSERLWRPDVVLLNAA 390
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 485 SMQLDDWXNDMQTCTFKFGSRMHNSDEXD 571
S+ ++ + D+QTC K GS ++ + D
Sbjct: 154 SIDVEFFPYDVQTCVLKLGSWTYDGFKVD 182
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.3 bits (90), Expect = 2e-05
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +1
Query: 139 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAD---LQMNWIDKRLS 303
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 304 WNAGEWGCGTWL-VSSERLWRPDVVLLNAA 390
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 22.6 bits (46), Expect = 4.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 512 DMQTCTFKFGSRMHNSDEXD 571
D QTC KFGS ++ + D
Sbjct: 163 DEQTCVLKFGSWTYDGFKVD 182
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.9 bits (89), Expect = 3e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 193 IVVNLTLHLRHANIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCGTWLVSSERLWRPD 369
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 370 VVLLNAA 390
+L N A
Sbjct: 92 TILYNNA 98
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 36.7 bits (81), Expect = 3e-04
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = +1
Query: 115 ENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHANIRESESTVRIQADLQMN 282
++ T+L + L YD + P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 283 WIDKRLSWNAGEW-GCGTWLVSSERLWRPDVVLLNAAAST 399
W D LSW ++ G V S+ +W PD+ + N+ T
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMT 138
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 33.9 bits (74), Expect = 0.002
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +1
Query: 139 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 297
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 298 LSWN--AGEWGCGTWLVSSERLWRPDVVLLN 384
L +N G T L + R+W PD+ N
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSN 124
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 33.1 bits (72), Expect = 0.003
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +1
Query: 127 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNWID 291
++++++++LL Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 292 KRLSWNAGEWGCGTWLVSSERLWRPDVVLLNAAAS 396
RLS+ + ER+WRPD N S
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHS 130
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 24.6 bits (51), Expect = 1.2
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 446 ISWIKRLDISTPISMQLDDWXNDMQTCTFKFGSRMHNSDEXDFVXDKXI 592
I ++ +L + +M + +D Q C + S H +DE F D +
Sbjct: 151 ILYMVKLTLKLSCAMNFLIYPHDTQECKLQMESLSHTTDEMIFQWDPDV 199
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.8 bits (49), Expect = 2.1
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +1
Query: 193 IVVNLTLHLRHAN-IRESESTVRIQADLQMNWIDKRLSWNAGEWGCGTWLVSS-----ER 354
++V+ + + N I + R+ ++ +WI+ RL + G V+ +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 355 LWRPDVVLLNAAAS 396
LW+PD LNA S
Sbjct: 71 LWQPDPYFLNAKVS 84
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 23.4 bits (48), Expect = 2.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 343 TPAKCRSPTPLRSNSVVCRSNSFED 269
TP + ++ PL + V CR+N E+
Sbjct: 26 TPRRKKNKKPLPTECVFCRNNGEEE 50
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 4.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 336 PSAAAPLPCVPTQS 295
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 8.6
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 461 RLDISTPISMQLDDWXNDMQTCTFKFGSRMHN 556
RL + ++L+ + D+Q C F S HN
Sbjct: 135 RLQATLNCGLRLEKFPFDVQECPLIFESWTHN 166
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,913
Number of Sequences: 438
Number of extensions: 3815
Number of successful extensions: 64
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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