Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_K02
         (857 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros...    42   8e-04

>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type I retrotransposable
            element  R1Dm.  ).
          Length = 1021

 Score = 42.3 bits (95), Expect = 8e-04
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +3

Query: 78   GIFNKRLADMRLREGHACDCGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGP--VYH 251
            G FN  L    L +  AC CG   ED  H+L  CPLY ++R   LDG+    +G   ++ 
Sbjct: 938  GSFNAFLHGRALSDTTACACGDPYEDWMHILCACPLYADLRD--LDGLGVQRLGENWIFE 995

Query: 252  ADLVRDEKNFRL 287
              L   EK  RL
Sbjct: 996  GILDDQEKTQRL 1007


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,341,410
Number of Sequences: 53049
Number of extensions: 569181
Number of successful extensions: 1505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4126982652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)