Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_J11
         (857 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   8.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   8.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 172  LLGVQQDNVYPQAYIRSEIRTLLSLA 249
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 695 NTNNTTRSMTSGSSKQANXKASKFRGGK 778
           NT+NT+++       +++   S FRG K
Sbjct: 97  NTSNTSKTFILSDKLESSDDTSLFRGPK 124


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 668 AEILESTQFNTNNTTRSMTSGSSKQAN 748
           A +LE+ Q N+NN+T +  + ++  +N
Sbjct: 213 AVVLETCQRNSNNSTITAGNANTNASN 239


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 445 DCRLHHMAFTNGNTTRNK 498
           DC L  + F N +TT N+
Sbjct: 64  DCMLKKVGFVNADTTFNE 81


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 695 NTNNTTRSMTSGSSKQANXKASKFRG 772
           NT+NT++++   +  +++   S FRG
Sbjct: 92  NTSNTSKTVILSNKLESSDDISLFRG 117


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 695 NTNNTTRSMTSGSSKQANXKASKFRG 772
           NT+NT++++   +  +++   S FRG
Sbjct: 92  NTSNTSKTIILSNKLESSDDISLFRG 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,545
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)