Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_J10
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.47 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 651  PPPPPPP 631
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 402  PPPPPPP 422
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 403  PPPPPPP 423
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 650  PPPPPPP 630
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 402  PPPPPPP 422
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 403  PPPPPPP 423
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 402  PPPPPPPXG 428
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 22.6 bits (46), Expect(2) = 0.47
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 404  PPPPPPXXG 430
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 21.0 bits (42), Expect(2) = 0.47
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = +2

Query: 392  WXXTPPPPPP 421
            W    PPPPP
Sbjct: 1350 WRQQQPPPPP 1359


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 375  KKIXFXGXXPPPPPPP 422
            + I   G   PPPPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 656  GXPPPPPPP 630
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 394  GXXPPPPPPP 423
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 136 PXLXGPPFPXGTXPPXGPP 192
           P    PP P    PP GPP
Sbjct: 34  PQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 487 PPXXXXPPPPP 455
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 402 PPPPPPPXGXXG 437
           P PPPPP    G
Sbjct: 341 PAPPPPPPSSSG 352



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -2

Query: 651 PPPPPPPXXXXXP 613
           P PPPPP     P
Sbjct: 341 PAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 597 GGXGGGGXXXXXGGGGGGG 653
           G  GG        GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 360 PPXKKKKIXFXGXXPPPPPPP 422
           P  + + + F    P PPPPP
Sbjct: 360 PSVQHEFVTFDLDEPLPPPPP 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,776
Number of Sequences: 438
Number of extensions: 15858
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)