Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_I23
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    90   3e-19
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    28   2.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    28   2.0  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   4.6  
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    26   8.1  
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    26   8.1  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.1  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 46/117 (39%), Positives = 68/117 (58%), Gaps = 3/117 (2%)
 Frame = +2

Query: 62  CEKRFMDPDELYRHLRKEHLYCHLCD-ADGK--NFYYASHSALAQHFRKDHYLCEEGECA 232
           C   F D DEL++H R++H  C++CD   G+  + Y+ ++ +L +HF KDHY+C E EC 
Sbjct: 250 CNTHFYDDDELFKHCREKHERCYICDQVAGRPTHQYFKNYDSLERHFEKDHYICRERECL 309

Query: 233 GQHLAAVFRSEIDLKAHIATTHGRGMPRGAARQARTLELQFNITPHPVATQRTPRDR 403
            +    VF +EIDLKAH    H     +   R+AR +  QF+  P P A+ R  R+R
Sbjct: 310 -ERKFVVFGTEIDLKAHQLDEHPHNFTQRELREARRIIPQFSYDP-PGASGRNRRER 364



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 16  DLDDTSHRGHPLCEF 60
           DL+ T  +GHP CEF
Sbjct: 235 DLEITGFKGHPKCEF 249


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -3

Query: 227 TRPLHISSDPCGNVEQVRSVKHNRNSFHRH----HTNDSTSAPCASDGTTHQDP*IVSHK 60
           TR LH  ++  G  E+   +    N+  R+    H ++   A C S    + DP  V HK
Sbjct: 605 TRSLHFVAEFLGETEEAEKLAGYENAMLRNLEDNHWDEEVQAYCDSSVDEYDDPINVCHK 664


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +2

Query: 32  HTGAIHF---VNSCEKRFMDPDELYRHLR 109
           HTG   F     SC+KRF   DEL RH+R
Sbjct: 26  HTGEKPFECSYPSCKKRFTRRDELIRHVR 54


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 245 LNVVRHTRPLHISSDPCGNVEQVRSVKHNRNSFH 144
           L++VRHT PL+ +S    + +++ S  + R S H
Sbjct: 258 LDLVRHTPPLNYTSSVDSSPQRMASDSYGRPSLH 291


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +2

Query: 53   VNSCEKRFMDPDELYRHLRKEHL 121
            V++C+K F + +++++HL+  HL
Sbjct: 1066 VSNCKKCFSNYEDMFKHLQHSHL 1088


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   GVKVTLMIPHTGAIHFVN 58
           G KVT  +PH G ++FV+
Sbjct: 78  GKKVTAFVPHDGCLNFVD 95


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 5   GVKVTLMIPHTGAIHFVN 58
           G KVT  +PH G ++FV+
Sbjct: 78  GKKVTAFVPHDGCLNFVD 95


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 53  VNSCEKRFMDPDELYRHLRKEH 118
           V +C K F+ P+ + +H+ K+H
Sbjct: 478 VGTCAKLFLGPEFVRKHINKKH 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,674
Number of Sequences: 5004
Number of extensions: 56089
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)