Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_I11
(909 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 38 2e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.13
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.13
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.13
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.13
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.13
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.13
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 27 0.18
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 27 0.18
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 1.3
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 1.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 1.3
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 1.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 25 1.3
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 24 2.2
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 2.9
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 5.1
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 6.7
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 8.9
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 37.5 bits (83), Expect = 2e-04
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +2
Query: 113 CENATSLSLMIXS---LLATYDRDSPPDSKIVXNLT--LXLRHANIRESXSTVRIQADLX 277
C++ TS S + L YDRD P+ K + L ++H N+ E TV L
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MXWIDKRLSWNAGEW 322
+ W L+W + E+
Sbjct: 88 LMWEQSHLTWKSSEF 102
Score = 21.8 bits (44), Expect = 8.9
Identities = 11/46 (23%), Positives = 16/46 (34%)
Frame = +1
Query: 430 VSNNGSGSCXKRLXXSTXXSMQXXNWXSDVQTCTFKFXSXMHNSXQ 567
V N+G+ C + W D+ CT S H S +
Sbjct: 141 VFNSGTILCVPFTTYTPVCEYDHTWWPYDILNCTIHIASWSHGSNE 186
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
++ E + A L + W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
++ E + A L + W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
++ E + A L + W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
++ E + A L + W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
++ E + A L + W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
++ E + A L + W+D L WN E+G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.9 bits (59), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
++ E + A L + W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 27.9 bits (59), Expect = 0.13
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
++ E + A L + W+D L WN E+G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 27.5 bits (58), Expect = 0.18
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +2
Query: 119 NATSLSLMIXSLLATYDRDSPPD---SKIVXNLTLXLRHAN-IRESXSTVRIQADLXMXW 286
N +++S ++ +LL YD PD + + +R I E T + W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGE 319
+D+RL++ G+
Sbjct: 62 VDRRLAFQGGK 72
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 27.5 bits (58), Expect = 0.18
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = +2
Query: 65 FSLPFLLTCAIASAAECENATSLSLMIXSLLATYDRDSPPDS--KIVXNLTLXL--RHAN 232
F +LL C ++ T+L + L YD + P S +I N+T+ L +
Sbjct: 27 FGFSYLLNCK-----NYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLME 81
Query: 233 IRESXSTVRIQADLXMXWIDKRLSWNAGEW 322
+ S + + + + + W D LSW ++
Sbjct: 82 FDDWTSVMELHSWMTLMWTDSHLSWKPSDF 111
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.6 bits (51), Expect = 1.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
N+ E ++ L W D +L W+ ++G
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
Score = 24.2 bits (50), Expect = 1.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 345 PRXRXWRPDVVLLNAA 392
P + W+PD+VL N A
Sbjct: 104 PPDKVWKPDIVLFNNA 119
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 345 PRXRXWRPDVVLLNAA 392
P WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 345 PRXRXWRPDVVLLNAA 392
P WRPD+VL N A
Sbjct: 106 PSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 345 PRXRXWRPDVVLLNAA 392
P WRPD+VL N A
Sbjct: 102 PSDHIWRPDIVLYNNA 117
Score = 24.2 bits (50), Expect = 1.7
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Frame = +2
Query: 68 SLPFLLTCAIASAAECENATSLSLMIXSLLATYDRDSPPDSKIVXNLTLXLR-------H 226
SL ++ + + C + LL+ Y++ P + LT+ ++
Sbjct: 4 SLVGIMWIVLVLISGCSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLID 63
Query: 227 ANIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
N++ T + + W D +L W+ E+G
Sbjct: 64 VNLKNQIMTTNLWVE--QSWYDYKLKWDPKEYG 94
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 345 PRXRXWRPDVVLLNAA 392
P R WRPD +L N A
Sbjct: 83 PYNRVWRPDTILYNNA 98
Score = 23.4 bits (48), Expect = 2.9
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 212 LXLRHA-NIRESXSTVRIQADLXMXWIDKRLSWNAGEW 322
L L H ++ E + + W D L WNA E+
Sbjct: 37 LSLHHIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEF 74
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 24.6 bits (51), Expect = 1.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 345 PRXRXWRPDVVLLNAA 392
P R W+PDV++ N+A
Sbjct: 101 PPHRLWKPDVLMYNSA 116
Score = 21.8 bits (44), Expect = 8.9
Identities = 6/18 (33%), Positives = 10/18 (55%)
Frame = +2
Query: 272 LXMXWIDKRLSWNAGEWG 325
L + W D + WN ++G
Sbjct: 76 LKLEWNDVNMRWNVSDYG 93
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.8 bits (49), Expect = 2.2
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Frame = +2
Query: 83 LTCAIASAAECENATSLSLMIXSLLATYDRDSPPDSKIVXNLTLX-------LRHANIRE 241
++C +A + + LL+ Y+R P LT+ L N++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 242 SXSTVRIQADLXMXWIDKRLSWNAGEWG 325
T + + W D +L WN ++G
Sbjct: 65 QIMTTNVWVE--QEWNDYKLKWNPDDYG 90
Score = 21.8 bits (44), Expect = 8.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 345 PRXRXWRPDVVLLNAA 392
P W PD+VL N A
Sbjct: 98 PSEHIWLPDIVLYNNA 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.4 bits (48), Expect = 2.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 321 GAAALGWCPRXRXWRPDVVLLNAA 392
G + + P W PD+VL N A
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA 126
Score = 23.0 bits (47), Expect = 3.8
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESXSTVRIQADLXMXWIDKRLSWNAGEWG 325
N++ T + + W D +L WN E+G
Sbjct: 74 NLKNQVMTTNVWVE--QRWNDYKLKWNPEEYG 103
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 337 PSAAAPLPCVPTQS 296
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 6.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 339 WCPRXRXWRPDVVLLNAA 392
+ P W PD+VL N A
Sbjct: 96 YVPSEHIWLPDIVLYNNA 113
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 8.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 463 RLXXSTXXSMQXXNWXSDVQTCTFKFXSXMHN 558
RL + ++ + DVQ C F S HN
Sbjct: 135 RLQATLNCGLRLEKFPFDVQECPLIFESWTHN 166
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,040
Number of Sequences: 438
Number of extensions: 2869
Number of successful extensions: 43
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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