Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_I09
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   285   3e-77
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   282   2e-76
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    32   0.68 
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.2  
05_04_0324 - 20273797-20274261                                         29   4.8  
01_05_0125 - 18382402-18382761,18382863-18383036                       28   8.3  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  285 bits (699), Expect = 3e-77
 Identities = 134/255 (52%), Positives = 179/255 (70%), Gaps = 3/255 (1%)
 Frame = +2

Query: 47  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 583
                      +  + G+K I+   +KM +Y S+VRVIAHTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185

Query: 584 LNGGTIEDKVKWAREHLEKPIPVDSVLAXMK*LTAL-VSPXQRIQRCPSRWXQXXYPVKT 760
           +NGGTI DKV +  +  EK IPVD+V    + +  + V+  +  +   +RW     P KT
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245

Query: 761 -QGS*EXCLXXTWHP 802
            +G  +      WHP
Sbjct: 246 HRGLRKVACIGAWHP 260


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  282 bits (692), Expect = 2e-76
 Identities = 133/255 (52%), Positives = 178/255 (69%), Gaps = 3/255 (1%)
 Frame = +2

Query: 47  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 226
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65

Query: 227 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 406
           K++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW   
Sbjct: 66  KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125

Query: 407 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAHIMEIQ 583
                      +  + G+K I+   +KM +Y SVVRVI HTQ++ +K  +QKKAH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185

Query: 584 LNGGTIEDKVKWAREHLEKPIPVDSVLAXMK*LTAL-VSPXQRIQRCPSRWXQXXYPVKT 760
           +NGGTI DKV +  +  EK IPVD+V    + +  + V+  +  +   +RW     P KT
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKT 245

Query: 761 -QGS*EXCLXXTWHP 802
            +G  +      WHP
Sbjct: 246 HRGLRKVACIGAWHP 260


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +2

Query: 566 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVLAXMK 676
           H++E + N  ++++K+K   +H E  +P+DS ++ +K
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDSDISFLK 496


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 466 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 582
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>05_04_0324 - 20273797-20274261
          Length = 154

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 125 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 298
           FP D+P K VH+    G  + +T ++ E  P +    +N     EA   +  P   CVGV
Sbjct: 60  FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117

Query: 299 VGYIETPHGLRAL 337
           +  ++  H LR L
Sbjct: 118 ISVLQ--HQLRQL 128


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 380 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 276
           ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 47  ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,103,224
Number of Sequences: 37544
Number of extensions: 466492
Number of successful extensions: 1050
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)