Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_I05
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.099
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.17 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 402 GGGXXPPPPPXXXGGGKKTPXPP 334
           GG   PPPPP   G G   P PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 603 PPPPPPXXXXXXXXXPPPXPP 541
           PPPPPP         PPP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 601 PPPPPPXXXXXXXXPXPXPPP 539
           PPPPPP        P P PPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 603 PPPPPPXXXXXXXXXPPPXPP 541
           PPPPPP         PPP PP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.70
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 631 KKKKKXXXXXPPPPPPXXXXXXXXPXPXPPP 539
           ++++K     PPPPPP        P P P P
Sbjct: 722 EEQQKLLLKSPPPPPPAVIVPTPAPAPIPVP 752


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 603 PPPPPPXXXXXXXXXPPPXPP 541
           PPPPPP         PPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 31.1 bits (67), Expect = 0.17
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 603 PPPPPPXXXXXXXXXPPPXPP 541
           PPPPPP         PPP PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 30.3 bits (65), Expect = 0.30
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -1

Query: 603 PPPPPPXXXXXXXXXPPPXPPXKKK 529
           PPPPPP         PPP P   KK
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 420 GGGXFXGGGXXPPPPPXXXGG 358
           G G F GG   PPP P   GG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGG 209


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 603 PPPPPPXXXXXXXXXPPP 550
           PPPPPP         PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378



 Score = 24.2 bits (50), Expect(2) = 3.8
 Identities = 13/48 (27%), Positives = 13/48 (27%)
 Frame = -1

Query: 477 KXXPPXKXXXXXXFFXKXXGGGXFXGGGXXPPPPPXXXGGGKKTPXPP 334
           K  PP           K   G         PPPPP         P PP
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355



 Score = 20.6 bits (41), Expect(2) = 3.8
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -1

Query: 600 PPPPPXXXXXXXXXPPPXPP 541
           PPP P         PP  PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPP 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,681
Number of Sequences: 5004
Number of extensions: 21716
Number of successful extensions: 243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)