Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_H23
(889 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 4.2
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 4.2
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 4.2
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 4.2
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 4.2
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 4.2
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 4.2
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 4.2
U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein. 31 7.4
L18987-1|AAA35498.1| 663|Homo sapiens alpha-2 type XI collagen ... 31 7.4
BX248309-1|CAM26005.1| 1622|Homo sapiens collagen, type XI, alph... 31 7.4
AL845446-3|CAI95551.1| 1650|Homo sapiens collagen, type XI, alph... 31 7.4
AL844527-6|CAI41834.1| 1650|Homo sapiens collagen, type XI, alph... 31 7.4
AL662824-16|CAI17611.2| 1650|Homo sapiens collagen, type XI, alp... 31 7.4
AL645940-2|CAI18063.2| 1650|Homo sapiens collagen type XI alpha ... 31 7.4
AL031228-15|CAI95623.1| 1650|Homo sapiens collagen type XI alpha... 31 7.4
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein.
Length = 1650
Score = 30.7 bits (66), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 RPYASSHPPLR--SRLHQPDHQIPEFHTPTTPDLTSISINPLTPY*KEFAPGLSSLSSE 686
+P+ + P + SRLH+P +Q P+ PT + I + L P +E A G L E
Sbjct: 240 QPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 298
>L18987-1|AAA35498.1| 663|Homo sapiens alpha-2 type XI collagen
protein.
Length = 663
Score = 30.7 bits (66), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 RPYASSHPPLR--SRLHQPDHQIPEFHTPTTPDLTSISINPLTPY*KEFAPGLSSLSSE 686
+P+ + P + SRLH+P +Q P+ PT + I + L P +E A G L E
Sbjct: 182 QPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 240
>BX248309-1|CAM26005.1| 1622|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1622
Score = 30.7 bits (66), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 RPYASSHPPLR--SRLHQPDHQIPEFHTPTTPDLTSISINPLTPY*KEFAPGLSSLSSE 686
+P+ + P + SRLH+P +Q P+ PT + I + L P +E A G L E
Sbjct: 212 QPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 270
>AL845446-3|CAI95551.1| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 30.7 bits (66), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 RPYASSHPPLR--SRLHQPDHQIPEFHTPTTPDLTSISINPLTPY*KEFAPGLSSLSSE 686
+P+ + P + SRLH+P +Q P+ PT + I + L P +E A G L E
Sbjct: 240 QPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 298
>AL844527-6|CAI41834.1| 1650|Homo sapiens collagen, type XI, alpha 2
protein.
Length = 1650
Score = 30.7 bits (66), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 RPYASSHPPLR--SRLHQPDHQIPEFHTPTTPDLTSISINPLTPY*KEFAPGLSSLSSE 686
+P+ + P + SRLH+P +Q P+ PT + I + L P +E A G L E
Sbjct: 240 QPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 298
>AL662824-16|CAI17611.2| 1650|Homo sapiens collagen, type XI, alpha
2 protein.
Length = 1650
Score = 30.7 bits (66), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 RPYASSHPPLR--SRLHQPDHQIPEFHTPTTPDLTSISINPLTPY*KEFAPGLSSLSSE 686
+P+ + P + SRLH+P +Q P+ PT + I + L P +E A G L E
Sbjct: 240 QPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 298
>AL645940-2|CAI18063.2| 1650|Homo sapiens collagen type XI alpha 2
protein.
Length = 1650
Score = 30.7 bits (66), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 RPYASSHPPLR--SRLHQPDHQIPEFHTPTTPDLTSISINPLTPY*KEFAPGLSSLSSE 686
+P+ + P + SRLH+P +Q P+ PT + I + L P +E A G L E
Sbjct: 240 QPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 298
>AL031228-15|CAI95623.1| 1650|Homo sapiens collagen type XI alpha 2
protein.
Length = 1650
Score = 30.7 bits (66), Expect = 7.4
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 516 RPYASSHPPLR--SRLHQPDHQIPEFHTPTTPDLTSISINPLTPY*KEFAPGLSSLSSE 686
+P+ + P + SRLH+P +Q P+ PT + I + L P +E A G L E
Sbjct: 240 QPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 298
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,646,137
Number of Sequences: 237096
Number of extensions: 2183857
Number of successful extensions: 5689
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5686
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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