Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_H14
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.11
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.13
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.57
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.0
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = +3
Query: 576 PPPPPPPPXKXXG----GGGXXXXXXXPPPP 656
PPPPPPP + G G G PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 30.7 bits (66), Expect = 0.25
Identities = 19/61 (31%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = +1
Query: 481 PPPPPXXKXXXXXXXXXXXXPPXXXXKXXXXXPPPPPPPXXKXGGG--GXXXXXXXPPPR 654
PPPPP + PP PPPPPPP G PPP
Sbjct: 312 PPPPPPSRRNRGK-------PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
Query: 655 P 657
P
Sbjct: 365 P 365
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 541 PPXXXXKXXXXXPPPPPPPXXKXGGGGXXXXXXXPPPRP 657
PP PPPPPPP GG P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 30.3 bits (65), Expect = 0.33
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +1
Query: 541 PPXXXXKXXXXXPPPPPPPXXKXGGGGXXXXXXXPPPRP 657
PP PPPPPPP GG P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +2
Query: 482 PPPPPXKKXXXXXXXGXXXXXPXXXKKXXXXXPPPPPPPXXKXGGG 619
P P P G P PPPPPPP GG
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 28.3 bits (60), Expect(2) = 0.13
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 582 PPPPPPXKXXGGGGXXXXXXXPPPP 656
PPPPPP G G PPPP
Sbjct: 761 PPPPPPPPGVAGAG--PPPPPPPPP 783
Score = 21.8 bits (44), Expect(2) = 0.13
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +3
Query: 558 KKXFXXPPPPPPP 596
+K PPPPPP
Sbjct: 725 QKLLLKSPPPPPP 737
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.57
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 576 PPPPPPPPXKXXGGGG 623
PPPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 567 FXXPPPPPPPPXKXXGG 617
F PPPPPPP GG
Sbjct: 944 FPPPPPPPPPLVSAAGG 960
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +3
Query: 576 PPPPPPPPXKXXGGGGXXXXXXXPPPP 656
PPPPPPPP G PPPP
Sbjct: 9 PPPPPPPP-------GFEPPSQPPPPP 28
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 567 FXXPPPPPPPP 599
+ PPPPPPPP
Sbjct: 187 YNPPPPPPPPP 197
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 576 PPPPPPPP 599
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 576 PPPPPPPP 599
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 576 PPPPPPPP 599
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 576 PPPPPPPP 599
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,602
Number of Sequences: 5004
Number of extensions: 31318
Number of successful extensions: 310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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