Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_H09
         (896 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0781 + 19572795-19573540,19573906-19573956,19574179-195742...    34   0.13 
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   3.8  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.8  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   8.8  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.8  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   8.8  

>04_03_0781 +
           19572795-19573540,19573906-19573956,19574179-19574251,
           19574772-19574876
          Length = 324

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +1

Query: 631 PXWPXVPRMSFPXXXXRAXPXWRPAPLSXRGXPXLLPLP 747
           P  P +P+ S P    RA P W P        P LLP P
Sbjct: 162 PAMPGIPQASIPTHMLRAAPPWLPPWSPVAAPPPLLPFP 200


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 188 VRVHRADTGRSSNELDRQTTELERRGMGLXHLAGVLGTL 304
           V+ H  +  R S EL+RQ  ELER+G  L    G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 203 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 114
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +3

Query: 75  SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 230
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 372 GRGERSPRRWLQPRLAVPRQASTSVPRTP 286
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -3

Query: 369 RGERSPRRWLQPRLAVPRQASTSVPRTPAKXCSPIPLRSNSVVCRSNSFEDLPVSA 202
           R  RSPRR   P     R  + +  R+PA   S  P+R++S     +   D+  +A
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSRSPADHERRDMSTAA 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,294,747
Number of Sequences: 37544
Number of extensions: 447845
Number of successful extensions: 1127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)