Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_H08
         (1031 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.36 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.36
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 853  PPPPPPPP 830
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 26.6 bits (56), Expect = 0.36
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -3

Query: 630  PPPPPPPP 607
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 853 PPPPPPPP 830
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 630 PPPPPPPP 607
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 22.2 bits (45), Expect(2) = 1.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 591 KKXPPPPPP 565
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348



 Score = 21.0 bits (42), Expect(2) = 1.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 645 GGXXXPPPPPPPP 607
           G    PP P PPP
Sbjct: 333 GDSDTPPKPAPPP 345


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 569 GGGGGXFFXXXXXGGGGGGGG 631
           G  GG        GGGGGG G
Sbjct: 33  GASGGSIVVGANNGGGGGGLG 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 853  PPPPPPPP 830
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 630  PPPPPPPP 607
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 642  GXXXPPPPPP 613
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 641  GXXXPPPPPP 612
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,504
Number of Sequences: 438
Number of extensions: 6636
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34467615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)