Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_H07
         (872 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0217 - 1712979-1713794                                           31   1.6  
09_02_0295 - 7039870-7040634                                           29   3.7  
01_07_0351 + 42952504-42952692,42952824-42952910,42953039-429532...    29   4.9  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    29   6.4  
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413...    28   8.5  
06_03_1000 - 26778993-26779478                                         28   8.5  
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63...    28   8.5  

>03_01_0217 - 1712979-1713794
          Length = 271

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = -2

Query: 547 CTWPAEEHR-CSAASRRPDCSTARCTSWTRSPDGRSTAGLGC 425
           C+ PA+  R C    R   C T     W   PDG ST    C
Sbjct: 172 CSRPAKRRRKCGEEKRCGHCQTTETPQWRVGPDGPSTLCNAC 213


>09_02_0295 - 7039870-7040634
          Length = 254

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 454 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLL 582
           L Y+S +C   CY  A       DV +RA+Y R  F    R L
Sbjct: 167 LVYISGLCVVYCYMKASNLFSRFDVHVRARYNRLGFVAFCRSL 209


>01_07_0351 +
           42952504-42952692,42952824-42952910,42953039-42953257,
           42953329-42953502,42954799-42954852,42954983-42955123,
           42955599-42955637,42956689-42957045
          Length = 419

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 154 GTKRCPSLWEFTL*TAGMFFNKTDFWPKLGDFRNKTL 44
           GTK   +LW+ T+ T+G  F+    W   G ++NK L
Sbjct: 180 GTKATINLWQPTIATSG-DFSLAQLWISAGSYQNKDL 215


>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
            6653569-6653766,6654485-6654568,6655175-6655920,
            6656480-6657341
          Length = 1194

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 259  EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 438
            E+ V NM  +    H  AHG +RL +E++   +R     + ++ R     + YK      
Sbjct: 1005 EQHVSNMCKSCS-NHARAHGQVRLAMEMEKMNIRLGKEMVTMICRQIIVPVYYKNLMARS 1063

Query: 439  PYFDRL-DYVSMMCN-EQCYSLAVEKL 513
                 L D  S   N    Y+L +EK+
Sbjct: 1064 AMLTCLTDSESQRANGNALYALTIEKM 1090


>09_02_0088 +
           4136698-4136857,4137530-4137558,4137992-4138954,
           4138973-4139301,4139398-4139485,4139766-4139864,
           4139935-4140245,4140532-4140685
          Length = 710

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 759 QTQRHVKRTPSWX--DVGGVHPGAADXFVELHNXXSLLKQPEEGS 631
           +T  H +   +W   ++ G H G  D  V LH   S+++Q   GS
Sbjct: 40  RTAYHFQPAKNWQNGEIVGGHSGKMDRLVRLHYGGSVVEQSNSGS 84


>06_03_1000 - 26778993-26779478
          Length = 161

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 358 GLSLRPVPVRDAAPRERLDAGARSSGSCC 272
           G +LRP  V   APR+   AG R +  CC
Sbjct: 83  GSALRPATVCPPAPRKPRPAGKRMTKRCC 111


>06_01_0079 -
           633595-633985,634346-634543,634864-635036,635355-635599,
           635683-635860,636291-636473,636769-636873,637709-637846,
           637933-638925
          Length = 867

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 24  SKMASFLNVLLRKSPNFGQKSVLLKNIPAVHNVNSQRDGHR 146
           S M  +L +LL     F ++++   N P+  + N+Q DG++
Sbjct: 496 SNMFKYLGILLEGRERFEEEALAGSNNPSSEDENTQHDGNK 536


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,644,242
Number of Sequences: 37544
Number of extensions: 506186
Number of successful extensions: 1242
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)