Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_H06
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 1.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 2.1
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965... 29 4.9
08_02_0813 + 21459776-21461128 28 8.5
07_03_1400 + 26287124-26287298,26287925-26288007,26288141-262882... 28 8.5
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.5
03_02_0111 + 5688649-5688942 28 8.5
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
02_01_0054 - 404464-405152,406087-406618 28 8.5
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 398 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 550
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +2
Query: 104 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 283
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 284 LDRQTTELERRGSGAAALGW 343
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 429 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSNSVVCRSNS 280
T + S GGCS + PP AFRG+ + P+ + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>03_02_0584 -
9650996-9651488,9651630-9652049,9652129-9652158,
9652201-9652287,9652657-9653669,9653832-9654854,
9654946-9654969
Length = 1029
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 651 RXXNRGEVEPPRGHVPDVXXXTRPGTRXGGRXXG 752
R N+GE R H PD RP R GGR G
Sbjct: 738 REKNKGEYHGGR-HAPDTFNQRRPDYRYGGRGVG 770
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 313 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 492
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 493 QL 498
+L
Sbjct: 289 EL 290
>07_03_1400 +
26287124-26287298,26287925-26288007,26288141-26288270,
26288369-26288442,26288797-26288883,26288976-26289100,
26289232-26289292,26289606-26289683,26289785-26289890,
26289978-26290123,26290264-26290380
Length = 393
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +1
Query: 484 ISMQLDXWXNDMQTCTFKFGSRMHNSDEMD 573
++++ W ND+++C F+ SR +S+ M+
Sbjct: 83 VNLEGGGWCNDVKSCVFRKSSRRGSSNHME 112
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 77 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 217
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 299 TELERRGSGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 472
T L + AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 366 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 280
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 427 GRGERSPRRWLQPRLAVPRQASTSVPRTP 341
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 8.5
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -1
Query: 350 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 192
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 191 GVGGGVPIVRCEERVDHEG 135
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,106,892
Number of Sequences: 37544
Number of extensions: 499689
Number of successful extensions: 1515
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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