Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_H02
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 40 3e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.008
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.055
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.39
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 6.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.3
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 6.3
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 6.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 25 8.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/39 (46%), Positives = 18/39 (46%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXXPPPPPXGXGGGXXPPPPPP 533
PPPPPP PPP P GG PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM--GGPPPPPPPP 768
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = -2
Query: 646 PPPPPXXXXXXXXXXXXXXPPPPPXGXGGGXXPPPPPP 533
P P P PPPPP G G PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = -2
Query: 646 PPPPPXXXXXXXXXXXXXXPPPPPXGXG-GGXXPPPPPP 533
P P P PPPPP G G PPPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -2
Query: 646 PPPPPXXXXXXXXXXXXXXPPPPPXGXGGGXXPPPPP 536
PPPPP PPPP GG P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXXPPPPPXGXGGGXXPPPPPP 533
PPPPPP PPPPP GG P P
Sbjct: 761 PPPPPPPPGVAGAGPPPP--PPPPPAVSAGGSRYYAPAP 797
Score = 25.4 bits (53), Expect(2) = 0.94
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 525 PPXGGGGGGXXPPPXP 572
PP G G G PPP P
Sbjct: 766 PPPGVAGAGPPPPPPP 781
Score = 21.4 bits (43), Expect(2) = 0.94
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = +3
Query: 372 PPXGXXLGGGXPPP 413
PP +GG PPP
Sbjct: 752 PPPAPIMGGPPPPP 765
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.5 bits (78), Expect = 0.008
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -2
Query: 589 PPPPPXGXGGGXXPPPPPPXG 527
PPPPP G PPPPPP G
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXXPPPPPXG 569
PPPPPP PPPPP G
Sbjct: 9 PPPPPPPPGFEPPSQP----PPPPPPG 31
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.055
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +3
Query: 534 GGGGGGXXPPPXPXGGGGGXXXXXXXXXXXXXXGGGGGG 650
GGG GG P P GG GG GGG GG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = +3
Query: 534 GGGGGGXXPPPXPXGGGGGXXXXXXXXXXXXXXGGGGGG 650
GG GGG PP GG GG GG GGG
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 534 GGGGGGXXPPPXPXGGGGGXXXXXXXXXXXXXXGGGGG 647
GGG GG P GGG G G GGG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXXPPPPPXGXGGGXXPPPPPP 533
PPPPPP PP G PPPPPP
Sbjct: 311 PPPPPPPSRRNRGK-------PPIGNGSSNSSLPPPPPP 342
Score = 28.7 bits (61), Expect = 0.89
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXXPPPPPXGXGGGXXPPPPPP 533
PPPPPP P PP G PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSI------PLPPQGRSA---PPPPPP 366
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXX-------PPPPPXGXGGGXXPPPP 539
PPPPPP PPPPP G P PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXX----PPPPPXGXGGGXXPPPP 539
PPPPPP PPPPP PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXXPPPPPXGXGGGXXPPPPPP 533
PPPPPP PPP PP PPP
Sbjct: 361 PPPPPPRSAPSTGRQ------PPPLSSSRAVSNPPAPPP 393
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Frame = -3
Query: 132 PFWEIFPXW--XGATLIXPXFVXLF 64
PFW FP W GA L+ LF
Sbjct: 903 PFWSSFPSWQLSGAVLVVDILATLF 927
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -2
Query: 649 PPPPPPXXXXXXXXXXXXXXPPPPPXGXGGGXXPPPPPPXGG 524
PP PPP P PPP PP P P G
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPP-----STAPPVPTPSAG 1225
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -2
Query: 577 PXGXGGGXXPPPPPP 533
P G GG PPPPP
Sbjct: 280 PMGPGGAPLVPPPPP 294
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 586 PPPPXGXGGGXXPP 545
PPPP G G G PP
Sbjct: 129 PPPPAGFGRGAPPP 142
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 586 PPPPXGXGGGXXPPPPPP 533
P GG PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPP 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,607
Number of Sequences: 5004
Number of extensions: 33594
Number of successful extensions: 391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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