Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_H02
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.37 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect(2) = 0.37
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 550  PPPPPPXGG 524
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 685  PPPPPPXXS 711
            PPPPPP  S
Sbjct: 1355 PPPPPPPPS 1363



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 685  PPPPPPXXS 711
            PPPPPP  S
Sbjct: 1356 PPPPPPPSS 1364



 Score = 21.0 bits (42), Expect(2) = 0.37
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 649  PPPPPP 632
            PPPPPP
Sbjct: 1355 PPPPPP 1360


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 562  GGXXPPPPPP 533
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 685 PPPPPPXXS 711
           PPPPPP  S
Sbjct: 343 PPPPPPSSS 351


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 550 PPPPPPXGG 524
           PPPPP  GG
Sbjct: 376 PPPPPIRGG 384


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 268 GPPXXXPPXXPP 303
           GPP   PP  PP
Sbjct: 45  GPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,073
Number of Sequences: 438
Number of extensions: 6838
Number of successful extensions: 71
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)