Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_G21
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.69 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          24   1.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   6.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 546 TRRCSAKAVQYASVCSAVSSLQPLQWWHFGVGSLRATRCR*RPKQPCP 403
           +RR +A  +    +CS+  S   + WW       RA R    P+  CP
Sbjct: 159 SRRRAAVLIAIVWICSSAISFPAIVWW-------RAVRTEEVPEDKCP 199


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 184 SSRGFSLRTLLTLIWIGHFLFLC*NFIPTSKT*ISIVIDRHLS 56
           S  G   + +L L+W  H   +    +P ++T  S+V   HL+
Sbjct: 58  SKAGIHRKKVLLLVWWDHKGIVYFELLPPNRTINSVVYIEHLT 100


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 482 SHCSGGTSASAPSGRRGAGSDRNSRVP 402
           S CS GT++S  S      SDR++  P
Sbjct: 174 SECSLGTASSTSSTASSRNSDRSAGSP 200


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 461 KCHHCSGCNEDTAEHTLAYCTAFAEQRRVL 550
           KC  CS    +  E  L  CT + +  R+L
Sbjct: 149 KCDKCSTYQSNGEEVCLENCTGYQQYLRLL 178


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -1

Query: 448 PPGDEVQVATETAVSREHLRRSEGETSSVAIHPVREDRADRLDSPSP 308
           PP  E +          ++++    T+SVA  P+     D +  PSP
Sbjct: 160 PPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSP 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,984
Number of Sequences: 438
Number of extensions: 4694
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)