Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_G19
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.67
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 28 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.8
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 8.3
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.67
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 736 PXPPXXXPXXXPXSXPXXPPPP 671
P PP P P S P PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 153 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 55
Y ES + D+ + SH+ A +I Q R+G R
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/61 (26%), Positives = 16/61 (26%)
Frame = -1
Query: 858 APAXXPPXXRXGAPXXXARGPXXPXXPXXAPXXXXXXXXPPPXXPXXAPXXXXPAPPXXX 679
AP PP P P P AP PP P PAP
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAA 486
Query: 678 P 676
P
Sbjct: 487 P 487
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/73 (26%), Positives = 20/73 (27%), Gaps = 1/73 (1%)
Frame = -1
Query: 861 PAPAXXPPXXRXGAPXXXARGPXXPXXPXXAPXXXXXXXXPPPXXPXXAPXXXXPAPPXX 682
P P P R P +R P P A PP P PP
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 681 XPRRXP-XPAXAP 646
P P P AP
Sbjct: 424 PPSAPPSLPPSAP 436
Score = 26.2 bits (55), Expect = 6.3
Identities = 20/77 (25%), Positives = 22/77 (28%)
Frame = -1
Query: 876 ARGXXPAPAXXPPXXRXGAPXXXARGPXXPXXPXXAPXXXXXXXXPPPXXPXXAPXXXXP 697
+R PA P AP G P PP P AP P
Sbjct: 382 SRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP----P 437
Query: 696 APPXXXPRRXPXPAXAP 646
+ P P P P AP
Sbjct: 438 SLPMGAPAAPPLPPSAP 454
Score = 26.2 bits (55), Expect = 6.3
Identities = 21/68 (30%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = -1
Query: 855 PAXXPPXXRXGAPXXXARG-PXXPXXPXXAPXXXXXXXXPPPXXPXXAPXXXXPAPPXXX 679
P PP AP G P P P AP PP A PA P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA------PPLPAGMPAAPPLPPAAPAPP 477
Query: 678 PRRXPXPA 655
P P PA
Sbjct: 478 PAPAPAPA 485
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/74 (28%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Frame = -1
Query: 861 PAPAXXPPXXRXGAPXXXARGPXXPXXPXXAPXXXXXXXXPPPXXPXXAPXXXXP--APP 688
PAP+ PP + P P AP P P AP P APP
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP----SGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 687 XXXPRRXPXPAXAP 646
P P AP
Sbjct: 1142 VPKPSVAAPPVPAP 1155
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/72 (25%), Positives = 20/72 (27%)
Frame = -1
Query: 861 PAPAXXPPXXRXGAPXXXARGPXXPXXPXXAPXXXXXXXXPPPXXPXXAPXXXXPAPPXX 682
PAP+ PP + P P P PPP P PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP-AAGVPPVPPPSEAPPVPKPSVGVPPVP 1211
Query: 681 XPRRXPXPAXAP 646
P P P P
Sbjct: 1212 PPSTAP-PVPTP 1222
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -1
Query: 741 PPPXXPXXAPXXXXPAPP 688
PPP P AP PAPP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/61 (27%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Frame = +2
Query: 647 GAXAGXGXRRGXXXG-GAGXXXXGAXXGXXGGGXXXXXXXXGAXXGXXGXXGPRAXXXGA 823
G G G G G G G G GGG G G G G G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Query: 824 P 826
P
Sbjct: 271 P 271
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 35 MSTTYIILLPFLLTCAIASAAECENATSLS 124
+S TYIILLPF C A +++ +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,931
Number of Sequences: 5004
Number of extensions: 24558
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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