Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_G04
(817 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF492646-1|AAO85488.1| 546|Homo sapiens proline rich, vinculin ... 35 0.40
AB097023-1|BAC77376.1| 712|Homo sapiens putative NFkB activatin... 35 0.40
AB093555-1|BAC44839.1| 712|Homo sapiens TIR domain containing a... 35 0.40
AB086380-1|BAC55579.1| 712|Homo sapiens TICAM-1 protein. 35 0.40
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 31 3.8
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 3.8
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 31 3.8
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 31 3.8
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 31 3.8
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 31 3.8
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 31 3.8
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 31 3.8
AK054581-1|BAB70764.1| 262|Homo sapiens protein ( Homo sapiens ... 31 3.8
AF070530-1|AAC28630.1| 416|Homo sapiens unknown protein. 31 5.0
AL359706-1|CAI12865.1| 495|Homo sapiens nuclear fragile X menta... 31 6.6
AL354816-1|CAC40689.2| 495|Homo sapiens nuclear fragile X menta... 31 6.6
AF159548-1|AAF15315.1| 495|Homo sapiens nuclear FMRP interactin... 31 6.6
>AF492646-1|AAO85488.1| 546|Homo sapiens proline rich, vinculin and
TIR domain containing protein-B protein.
Length = 546
Score = 34.7 bits (76), Expect = 0.40
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = +3
Query: 390 VFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYIN 569
V P A S +P T T+ + VE A P S + I + PC +
Sbjct: 139 VAPDATSTGLPDTPAAPETSTNYPVECTEGSAGPQSLPLPI-----LEPVKNPCSVKDQT 193
Query: 570 PIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP-SAYLTPSSL 728
P+ S P P P P TP E +P PP S P SA+LTPSSL
Sbjct: 194 PLQLSVEDTTSPNTK--PCPPTPTTP---ETSPPPPPPPPSSTPCSAHLTPSSL 242
>AB097023-1|BAC77376.1| 712|Homo sapiens putative NFkB activating
protein protein.
Length = 712
Score = 34.7 bits (76), Expect = 0.40
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = +3
Query: 390 VFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYIN 569
V P A S +P T T+ + VE A P S + I + PC +
Sbjct: 278 VAPDATSTGLPDTPAAPETSTNYPVECTEGSAGPQSLPLPI-----LEPVKNPCSVKDQT 332
Query: 570 PIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP-SAYLTPSSL 728
P+ S P P P P TP E +P PP S P SA+LTPSSL
Sbjct: 333 PLQLSVEDTTSPNTK--PCPPTPTTP---ETSPPPPPPPPSSTPCSAHLTPSSL 381
>AB093555-1|BAC44839.1| 712|Homo sapiens TIR domain containing
adaptor inducing interferon-beta protein.
Length = 712
Score = 34.7 bits (76), Expect = 0.40
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = +3
Query: 390 VFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYIN 569
V P A S +P T T+ + VE A P S + I + PC +
Sbjct: 278 VAPDATSTGLPDTPAAPETSTNYPVECTEGSAGPQSLPLPI-----LEPVKNPCSVKDQT 332
Query: 570 PIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP-SAYLTPSSL 728
P+ S P P P P TP E +P PP S P SA+LTPSSL
Sbjct: 333 PLQLSVEDTTSPNTK--PCPPTPTTP---ETSPPPPPPPPSSTPCSAHLTPSSL 381
>AB086380-1|BAC55579.1| 712|Homo sapiens TICAM-1 protein.
Length = 712
Score = 34.7 bits (76), Expect = 0.40
Identities = 37/114 (32%), Positives = 46/114 (40%), Gaps = 1/114 (0%)
Frame = +3
Query: 390 VFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYIN 569
V P A S +P T T+ + VE A P S + I + PC +
Sbjct: 278 VAPDATSTGLPDTPAAPETSTNYPVECTEGSAGPQSLPLPI-----LEPVKNPCSVKDQT 332
Query: 570 PIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP-SAYLTPSSL 728
P+ S P P P P TP E +P PP S P SA+LTPSSL
Sbjct: 333 PLQLSVEDTTSPNTK--PCPPTPTTP---ETSPPPPPPPPSSTPCSAHLTPSSL 381
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 258 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 419
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 258 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 419
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 93 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 258 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 419
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 258 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 419
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 258 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 419
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 258 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 419
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 258 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 419
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 35 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 258 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 419
+ +L DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 46 YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AK054581-1|BAB70764.1| 262|Homo sapiens protein ( Homo sapiens
cDNA FLJ30019 fis, clone 3NB692000545. ).
Length = 262
Score = 31.5 bits (68), Expect = 3.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 600 QPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAPSAYLTPSSL 728
+PP + PFP +P +P FAP L+PP +AP + P L
Sbjct: 85 RPPSS--PFPPVPGSP----FAPSLRPPAWMDAPRLPVRPGVL 121
>AF070530-1|AAC28630.1| 416|Homo sapiens unknown protein.
Length = 416
Score = 31.1 bits (67), Expect = 5.0
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 519 LALMHQATLPCDLGYINPIIKSPNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEA 698
L ++ PC + P+ S P P P P TP E +P PP S
Sbjct: 20 LPILEPVKNPCSVKDQTPLQLSVEDTTSPNTK--PCPPTPTTP---ETSPPPPPPPPSST 74
Query: 699 P-SAYLTPSSL 728
P SA+LTPSSL
Sbjct: 75 PCSAHLTPSSL 85
>AL359706-1|CAI12865.1| 495|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 1 protein.
Length = 495
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 585 PNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP 701
P+S QPP P P P+ + PG +PP +++P
Sbjct: 61 PSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
>AL354816-1|CAC40689.2| 495|Homo sapiens nuclear fragile X mental
retardation protein interacting protein 1 protein.
Length = 495
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 585 PNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP 701
P+S QPP P P P+ + PG +PP +++P
Sbjct: 61 PSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
>AF159548-1|AAF15315.1| 495|Homo sapiens nuclear FMRP interacting
protein 1 protein.
Length = 495
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 585 PNSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSEAP 701
P+S QPP P P P+ + PG +PP +++P
Sbjct: 61 PSSESQPPMEAQSLPGAP-PPFDAQILPGAQPPFDAQSP 98
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,965,049
Number of Sequences: 237096
Number of extensions: 2732158
Number of successful extensions: 10783
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10775
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -