Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F22
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.65 
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    28   2.0  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    27   2.6  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   6.0  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    26   8.0  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   8.0  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   8.0  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +3

Query: 321 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 473
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 770 APPPXRIKKELLICQSFRCPGLVRFPVLSQIKP 672
           A  P R+ K  +     RCP ++R+P L  IKP
Sbjct: 374 ATAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = -2

Query: 756 PNQERAVN----LSILPVSGPGEISRVESN*AAGSTSWWCPSVNSFKFQLCNHTPPGVQ 592
           PN E+ V     LS  P+S  G+   + +    G   +W P+      +LC+    G++
Sbjct: 62  PNSEKVVQVGQGLSFKPLSLLGKCGYIAAGGQLGEFDYWSPTSKQTHMKLCDQHNNGIE 120


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 752 IKKELLICQSFRCPGLVRFPVLSQIKPQAPXPGGALPSIPLSFSFAT 612
           I K+LL  +SFR P LV      +I   +      LPS P +  F++
Sbjct: 328 ISKDLLEYKSFRIPPLVEAAESEKISQLSTLEKRTLPSFPYNPFFSS 374


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 557 WLGGQLPGNQRFWTPGGVWLQS*NLKELTEGHHQXVEPAA*FDST 691
           WLGGQL        P  ++L    +    EG +  V+ AA F ST
Sbjct: 118 WLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTST 162


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 732 LSILPVSGPGEISRVESN*AAGSTSW 655
           +SIL V+GP +  R+  +   G T W
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLW 239


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 366 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 473
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,463
Number of Sequences: 5004
Number of extensions: 66655
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)