Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F14
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.29 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.7  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   6.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +3

Query: 267 PXGXGPPPPXXXFXPXXPPPPP 332
           P    PPPP   F P   PPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 282 PPPPXXXFXPXXPPPPPG 335
           PPP      P  PPPPPG
Sbjct: 752 PPPAPIMGGPPPPPPPPG 769



 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 273 GXGPPPPXXXFXPXXPPPPP 332
           G  PPPP        PPPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 267 PXGXGPPPPXXXFXPXXPPPPP 332
           P    PPP      P  PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 521 GGXXGGPPPXPSG 483
           GG  GGPPP P G
Sbjct: 194 GGGSGGPPPGPGG 206



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/65 (30%), Positives = 20/65 (30%)
 Frame = -1

Query: 460 GGAXXAXGGGGXKXXXXGXXXXXXGXXLFXXAPPXXXXXXPPPGGGGGXXGXKXXXGGGG 281
           GG     GG G      G      G   F   P        P G GGG  G     GG G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGG--PGGFGGGPGGFGGGLGGFG 255

Query: 280 PXPXG 266
             P G
Sbjct: 256 GGPGG 260


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 334 PGGGGGXXGXKXXXGGGGPXPXGXFF 257
           PGG GG  G     GG G  P G  F
Sbjct: 80  PGGPGGGPGEGFPGGGFGFDPFGDIF 105


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
 Frame = +3

Query: 309 PXXPPPPPGGGXXXXXXG-GAXXKSXXPXXXXXXPXXFXXLPPPPXAXXAPP 461
           P  PPPP          G G+   S  P            +P PP    APP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,885
Number of Sequences: 5004
Number of extensions: 19594
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)