Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F10
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    27   4.1  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    24   4.1  
05_01_0131 + 888247-888771,889092-889154                               24   4.5  

>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 26.6 bits (56), Expect(2) = 4.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -2

Query: 654 PPPPPPPP 631
           PPPPPPPP
Sbjct: 8   PPPPPPPP 15



 Score = 21.0 bits (42), Expect(2) = 4.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 510 GGGXFFFXXPPP 475
           GGG  F+  PPP
Sbjct: 26  GGGGEFYRGPPP 37


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 23.8 bits (49), Expect(2) = 4.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 653 PPPPPPP 633
           PPPPPPP
Sbjct: 54  PPPPPPP 60



 Score = 23.8 bits (49), Expect(2) = 4.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 650 PPPPPPP 630
           PPPPPPP
Sbjct: 92  PPPPPPP 98


>05_01_0131 + 888247-888771,889092-889154
          Length = 195

 Score = 23.8 bits (49), Expect(2) = 4.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 653 PPPPPPP 633
           PPPPPPP
Sbjct: 133 PPPPPPP 139



 Score = 23.8 bits (49), Expect(2) = 4.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 650 PPPPPPP 630
           PPPPPPP
Sbjct: 160 PPPPPPP 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,084
Number of Sequences: 37544
Number of extensions: 395111
Number of successful extensions: 34918
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10622
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)