Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F05
         (938 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              23   4.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   5.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   7.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   7.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.2  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 37  IHCAWRGFFITDKLVDILCLSVIKCQ 114
           +HC  R  F++D+++      V  CQ
Sbjct: 20  VHCGTRPSFVSDEMIATAASVVNACQ 45


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 542 DGQCLAYNTTHYRDHFVQESWVRVSLGPSRDTLERP 435
           D Q   Y    + +  V  + VRV LGP  D   RP
Sbjct: 514 DHQPYQYKIAVHSEQNVPGAVVRVFLGPKHDHQGRP 549


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 740 FMKILYXGASDSNCLCIXXSQSQGSFQA 823
           F+K +  G S ++C  +  +   G F+A
Sbjct: 25  FIKNMITGTSQADCAVLIVAAGTGEFEA 52


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 740 FMKILYXGASDSNCLCIXXSQSQGSFQA 823
           F+K +  G S ++C  +  +   G F+A
Sbjct: 41  FIKNMITGTSQADCAVLIVAAGTGEFEA 68


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 740 FMKILYXGASDSNCLCIXXSQSQGSFQA 823
           F+K +  G S ++C  +  +   G F+A
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGTGEFEA 125


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 84  VHQLISDKESAPSTMDITQCSRIPXP 7
           +HQ IS K+ +P+T   ++CS I  P
Sbjct: 266 MHQ-ISKKKLSPATPKGSKCSMITTP 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,396
Number of Sequences: 438
Number of extensions: 4854
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)