Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F04
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   2.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    26   6.0  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   8.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   8.0  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 510  RSPNHNPNPKYNLNPKASTHQRNRLSRSPRDPNMNP 617
            + P+H PNP   + P++     +R+S SP  P  NP
Sbjct: 949  QQPSH-PNPYTPVAPQSPVAAASRISSSPNMPPSNP 983


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 534 PKYNLNPKASTHQRNRLSRSPRDPNMNPDITR 629
           P+  +  + S H  NR+   PR    NP +TR
Sbjct: 508 PRKRVTSRMSEHTGNRVVSFPRGSAFNPRVTR 539


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 200 IVPVSLSLPFAPVPLFPSSPG 138
           I+ + L++PF  +PL P+ PG
Sbjct: 126 IIGLPLTIPFILIPLIPNIPG 146


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 194 PVSLSLPFAPVPLFPSSPGIDCNPVSGEVVAQVA 93
           P  L  P  PVP  P+ PG++   +   V + +A
Sbjct: 425 PAPLVTPSLPVPSIPAVPGMEAMAMPPGVTSSIA 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,748
Number of Sequences: 5004
Number of extensions: 27900
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)