Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F04
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0664 + 4979892-4979931,4980040-4980236,4982340-4982723,498...    29   3.6  
02_01_0688 + 5131555-5132334                                           29   6.4  
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279...    28   8.4  
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979...    28   8.4  

>07_01_0664 +
           4979892-4979931,4980040-4980236,4982340-4982723,
           4983499-4983549,4983659-4983741,4983818-4983917,
           4984410-4984488,4984957-4985080,4985605-4985711,
           4985810-4985938,4987004-4987089,4987200-4987367,
           4987477-4987637,4987721-4987752,4987866-4988047,
           4988386-4988465,4988885-4988950,4989060-4989349,
           4990433-4990540,4991521-4991618,4991680-4991782,
           4992269-4992345,4992449-4992520,4992579-4992670,
           4992909-4992989,4993290-4993392,4994334-4994492,
           4994696-4995085
          Length = 1213

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 170 APVPLFPSSPGIDCNPVSGEVVAQVARRTVRGHSFPAPVD 51
           A VP+ P S G D NP S + +A    R ++  + P  +D
Sbjct: 880 AAVPVIPDSEGTDSNPFSLDALAVFMFRVLQRDNHPGNLD 919


>02_01_0688 + 5131555-5132334
          Length = 259

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 215 ASVDAIVPVSLSLPFAPVPLFPSSPGIDCNPVSGEVVAQV 96
           A   A  PV  +   AP+PLFP+ P      V G VV+QV
Sbjct: 30  APAPAPPPVPAAAVAAPLPLFPAQPTAPA-AVGGAVVSQV 68


>12_02_0712 +
           22426945-22426981,22427517-22427623,22427707-22427955,
           22429309-22429937,22430013-22430192,22430267-22430555,
           22431183-22431247,22431379-22431471,22431811-22431897,
           22431971-22432071,22432571-22432692
          Length = 652

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 504 GDRSPNHNPNPKYNLNPKASTHQRNRLSRSPR 599
           G+ SP+ NP+   ++NP A+TH  +  + S R
Sbjct: 36  GNVSPSDNPDNMEDVNPSATTHSGDTATSSIR 67


>02_05_0339 -
           28094581-28094817,28095011-28096381,28097713-28097922,
           28098047-28098283,28098677-28099041,28099661-28099970
          Length = 909

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 449 MTEAAFSAVSLGRIDSTRRTQTPKPTLRAPASAC 348
           +   AFSA   G +   RRTQ  KP + A  S C
Sbjct: 116 VVRGAFSATEEGFLTLVRRTQFLKPMIAAVGSCC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,458
Number of Sequences: 37544
Number of extensions: 214427
Number of successful extensions: 973
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)