Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F03
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63...    31   0.88 
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438...    29   4.7  
06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832     29   6.2  

>04_01_0065 -
           636957-637082,637165-637251,637365-637625,637695-638100,
           640036-640223
          Length = 355

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 18/75 (24%), Positives = 33/75 (44%)
 Frame = -3

Query: 301 FVDPIHLKICQYPXGGLGLTNVSMSQMQGQVDYDFGVRGETPDRTLRGASRS*GTVMLRF 122
           ++  +H    + P G  G+ N+S+  +    D +    G +PD  L G   +   ++ R 
Sbjct: 6   YLQSLHFNCIRLPDGA-GVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64

Query: 121 RILPH*L*HQVRRNW 77
            I PH    ++ R W
Sbjct: 65  EIYPHNKEERIARTW 79


>06_01_0606 -
           4382133-4382704,4383017-4383336,4384152-4384258,
           4384339-4384512,4384956-4385204,4386831-4386986
          Length = 525

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 94  DAIASAAECENATSLSLMIDSLLATYDRESPPVLQNRSQPD 216
           DA    A   +  SL   +DSL     +++PPV Q + +P+
Sbjct: 418 DAQGPPASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458


>06_03_0597 - 22616859-22616935,22617225-22617308,22617637-22617832
          Length = 118

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 797 PGPXEXGPPRXPGPXPPXRXPGXXLQXKP 711
           P P    P    GP PP R PG   Q  P
Sbjct: 83  PDPKNPPPSHRVGPGPPSRNPGQDQQHSP 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,806,680
Number of Sequences: 37544
Number of extensions: 410930
Number of successful extensions: 1326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)