Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F02
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...   143   2e-35
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    29   0.64 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    28   1.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.0  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   6.0  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    26   7.9  

>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  143 bits (347), Expect = 2e-35
 Identities = 68/139 (48%), Positives = 95/139 (68%), Gaps = 5/139 (3%)
 Frame = +1

Query: 79  NPHIPQYIASAPWYYGTSGPT--LKHQR--PQEDREGQFTKLD-KYYNKGVDVTKVATKF 243
           NP+IP++I++APWY         L HQR   +E   G  + ++  +Y +G  +   ATK+
Sbjct: 49  NPYIPKFISTAPWYAQDDDAVERLAHQRIGKKETPSGGRSSIEGSWYVRGKKLGPAATKY 108

Query: 244 RKGACENCGAMTHKKKDCLERPRKIGAKFTNAGIAADEFAQPDLNLSYDGKRDRWNGYDP 423
           RKGACENCGAM+HK KDC+ERPRK GA++T   I ADE  Q D+N+S+D KRDRWNGYD 
Sbjct: 109 RKGACENCGAMSHKVKDCMERPRKRGARWTGEDIQADEVIQ-DINVSWDAKRDRWNGYDA 167

Query: 424 EQHKAIIEEYQKVEEAKRE 480
             +K +IE Y+K++E + +
Sbjct: 168 TDYKKVIERYEKLDELQNK 186


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 638 TQPSXCGIWTPFRLXRTPXSLYXKHPP 718
           T PS  GIW+PF     P  +Y K  P
Sbjct: 119 TNPSVRGIWSPFSDQAKPHEIYKKKSP 145


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 256 CENCGAMTHKKKDCLER 306
           C+NCG + H++ DC ER
Sbjct: 311 CQNCGNVGHRRFDCPER 327


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = -1

Query: 297 AILLLVCHRTTVFTCPFPEFCCYFC-HINSFIV-IFIELCELSLSVLLRPLMFKSRSRSP 124
           +I L+  H        F   C  FC H ++    + I   +LSLS    PL  K    + 
Sbjct: 43  SIPLINTHSNLCLFSNFSHSCFLFCTHPDTLPTSLSINPKKLSLSFSF-PLSQKRPFPNF 101

Query: 123 IVPWSRCNILRYMRIYVFAFMLLPVFISFSFVMAVLF 13
           + P++   +  +  + +F F LL  F+SFSF  + LF
Sbjct: 102 LHPFTGSELSLFRCLLLFFFFLL-FFLSFSFSFSFLF 137


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 244 RKGA-CENCGAMTHKKKDCLERPRKIGAKF 330
           R+GA C  CG + H  +DC    ++ G +F
Sbjct: 80  RQGAECYKCGRVGHIARDCRTNGQQSGGRF 109


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 304 RPRKIGAKFTNAGIAADEFAQPDLN 378
           RP+K+G K  NA I  DEF +  L+
Sbjct: 252 RPQKLGIKKANADIDFDEFEKAVLS 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,642
Number of Sequences: 5004
Number of extensions: 49069
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)