Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_F02
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 172 3e-43
07_03_0964 - 22989470-22989618,22989729-22990476 31 0.89
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062... 30 2.7
11_03_0149 + 10787332-10787454,10787776-10788529,10790406-107904... 29 3.6
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 29 3.6
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 8.3
04_04_0769 + 27957562-27957745,27958444-27958511,27958977-279590... 28 8.3
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 172 bits (418), Expect = 3e-43
Identities = 99/222 (44%), Positives = 126/222 (56%), Gaps = 21/222 (9%)
Frame = +1
Query: 64 EGKDINPHIPQYIASAPWYYGTSGPTLKHQRPQEDREGQFTKLDKYYNKGVDVTKVATKF 243
+GK+INPHIPQY++SAPWY P+LKHQR + + +TK +Y++G + + A K+
Sbjct: 36 DGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWKS-DPNYTK--SWYDRGAKLFQ-ANKY 91
Query: 244 RKGACENCGAMTHKKKDCLERPRKIGAKFTNAGIAADEFAQPDLNLSYDGKRDRWNGYDP 423
RKGACENCGAMTH KK C+ERPR +GAK+TN IA DE + L YDGKRDRWNGYDP
Sbjct: 92 RKGACENCGAMTHDKKSCMERPRSVGAKWTNINIAPDEKVE-SFELDYDGKRDRWNGYDP 150
Query: 424 EQHKAIIEEYQKVEEAK----RELRAKKLE----------IDPTAXXXXXXXXXXXXXXX 561
+ +I +Y+ EEA+ +E + KKLE +
Sbjct: 151 STYTRVIADYEAREEARKKYLKEQQLKKLEEKDGEEGDENVASEEEDEEDGLKIDEAKVD 210
Query: 562 XXXXMPGXKVDSXQRI-------TVRNLRXREDTAXXLRNLD 666
M KV+ R TVRNLR REDTA L NLD
Sbjct: 211 ESAQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLD 252
>07_03_0964 - 22989470-22989618,22989729-22990476
Length = 298
Score = 31.5 bits (68), Expect = 0.89
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +1
Query: 124 GTSGPTLKHQRPQEDREGQFTKLDKYYNKGVDVTKVATKFRKGACENCGAMTHKKKDCLE 303
G+S ++ + P + K D + K KG C CG H KDC E
Sbjct: 170 GSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPE 229
Query: 304 R-PRKIGAKFTNAGIAADEFAQPDLNLSYDGKR 399
R RK + G + + + L DGKR
Sbjct: 230 RKDRKSANMIISEGGGTSGYGR-ERFLLVDGKR 261
>02_05_0530 -
29804939-29805547,29805658-29805885,29805978-29806261,
29807095-29807199,29807648-29808155
Length = 577
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -3
Query: 724 RRRGVFXIEXVWGSXKAE-WGPDSAGT 647
RR+GV IE V G +AE WGP S+ T
Sbjct: 5 RRQGVVAIECVAGGSRAEEWGPGSSET 31
>11_03_0149 +
10787332-10787454,10787776-10788529,10790406-10790473,
10791254-10791421
Length = 370
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 256 CENCGAMTHKKKDCLERPRKIGAKFTNAGIAADE 357
C NCG H C ++ ++ G + TNA D+
Sbjct: 136 CFNCGGKGHYSNKCPQKQKQHGVRSTNAAAMKDK 169
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +1
Query: 124 GTSGPTLKHQRPQEDREGQFTKLDKYYNKGVDVTKVATKFRKGACENCGAMTHKKKDCLE 303
G+S ++ + P + K D + K KG C CG H KDC E
Sbjct: 170 GSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPE 229
Query: 304 R 306
R
Sbjct: 230 R 230
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 256 CENCGAMTHKKKDCLERPRKIGAKFTNAG--IAADEFAQPDLNLSYDG 393
CE CG H + DC E + N G +AA++ ++N+ DG
Sbjct: 260 CEVCGNTGHSENDCSETREEAMYMGNNNGKKLAANDKILENINVKLDG 307
>04_04_0769 +
27957562-27957745,27958444-27958511,27958977-27959058,
27959193-27959239,27959349-27959474,27960439-27960526,
27960922-27961034,27961976-27962038,27962110-27962165,
27962502-27962594,27962991-27963092,27963178-27963226,
27963318-27963386,27963486-27963572
Length = 408
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -3
Query: 142 E*VPKSHSTMEQMQYTEVYEDLCL------CLHAFTSLHFIFFCNG 23
E P++HS +EQ+ + E E L CL A SLH IF G
Sbjct: 150 EETPENHSLLEQILHLEPLEALAAASKTVDCLKAVHSLHAIFLIAG 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,653,691
Number of Sequences: 37544
Number of extensions: 370354
Number of successful extensions: 962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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