Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F01
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.18 
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    27   2.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   6.8  
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   6.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 686 PPXXXGXXPPXXXXPPPPPPXXXKKK 609
           PP   G  PP    PPPPP    K+K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
 Frame = -3

Query: 685 PPXXGGXXPPXXG------XPPPPPPXXXKKK 608
           PP      PP  G       PPPPPP   KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 97  RQNAKTQHHCXLMIDSLLATYDRDSPPTPNRSQ 195
           ++ A TQ  C L++ +LL ++ + S  TP +S+
Sbjct: 37  KKTADTQSSCKLLLVALLESFCKHSDQTPEQSK 69


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 685 PPXXGGXXPPXXGXPPPPPP 626
           PP   G  PP    PPPPPP
Sbjct: 767 PPGVAGAGPPP---PPPPPP 783


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 662  PPXXXXPPPPPPXXXKKKXXFFS 594
            P     PPPPPP   +KK  + +
Sbjct: 1091 PSAVPPPPPPPPAEVEKKDLYLA 1113


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 3   LVHSFNRSVVI-KCR-RLILFCYXFLLTCAIASAAECENATSL 125
           LV  +  ++++ KCR    +FC  FL +  +   A C N  SL
Sbjct: 126 LVAQYPAAILMQKCRLSYFIFCNVFLWSAMVCLMAACRNGPSL 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,639
Number of Sequences: 5004
Number of extensions: 30613
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)