Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_F01
(765 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.096
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.096
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.096
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.17
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.17
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.17
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 0.68
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 30 2.1
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 2.7
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 29 3.6
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 29 3.6
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 29 3.6
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.8
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.8
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 28 6.3
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 8.4
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 8.4
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 8.4
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.096
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 283 PPAGGSPPPPRAGSPPPPPP 302
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPPP
Sbjct: 258 PPAAGSPPPPRTGSPPPPP 276
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPPP
Sbjct: 266 PPRTGSPPPPPTGSPPPPP 284
Score = 31.1 bits (67), Expect = 0.90
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG PP PPPPP
Sbjct: 282 PPPAGGSPPPPRAGSPPPPP 301
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG PP PPPPP
Sbjct: 314 PPQAGGSPPPAGTGSPPPPP 333
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPPXXXKKK 608
PP G PP G PPPP K++
Sbjct: 313 PPPQAGGSPPPAGTGSPPPPPRQKRQ 338
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPP
Sbjct: 274 PPPTGSPPPPPAGGSPPPP 292
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP G PP PPPPP
Sbjct: 257 PPPAAGSPPPPRTGSPPPPP 276
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP G PP PPPPP
Sbjct: 265 PPPRTGSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.096
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 304 PPAGGSPPPPRAGSPPPPPP 323
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPPP
Sbjct: 279 PPAAGSPPPPRTGSPPPPP 297
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPPP
Sbjct: 287 PPRTGSPPPPPTGSPPPPP 305
Score = 31.1 bits (67), Expect = 0.90
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG PP PPPPP
Sbjct: 303 PPPAGGSPPPPRAGSPPPPP 322
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG PP PPPPP
Sbjct: 335 PPQAGGSPPPAGTGSPPPPP 354
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPPXXXKKK 608
PP G PP G PPPP K++
Sbjct: 334 PPPQAGGSPPPAGTGSPPPPPRQKRQ 359
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPP
Sbjct: 295 PPPTGSPPPPPAGGSPPPP 313
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP G PP PPPPP
Sbjct: 278 PPPAAGSPPPPRTGSPPPPP 297
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP G PP PPPPP
Sbjct: 286 PPPRTGSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.096
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 289 PPAGGSPPPPRAGSPPPPPP 308
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPPP
Sbjct: 264 PPAAGSPPPPRTGSPPPPP 282
Score = 31.5 bits (68), Expect = 0.68
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPPP
Sbjct: 272 PPRTGSPPPPPTGSPPPPP 290
Score = 31.1 bits (67), Expect = 0.90
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG PP PPPPP
Sbjct: 288 PPPAGGSPPPPRAGSPPPPP 307
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG PP PPPPP
Sbjct: 320 PPQAGGSPPPAGTGSPPPPP 339
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPPXXXKKK 608
PP G PP G PPPP K++
Sbjct: 319 PPPQAGGSPPPAGTGSPPPPPRQKRQ 344
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPP 629
PP G PP G PPPP
Sbjct: 280 PPPTGSPPPPPAGGSPPPP 298
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP G PP PPPPP
Sbjct: 263 PPPAAGSPPPPRTGSPPPPP 282
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP G PP PPPPP
Sbjct: 271 PPPRTGSPPPPPTGSPPPPP 290
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPP 747
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPP 763
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG P G PPPPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPP 748
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG P G PPPPPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPP 764
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Frame = -3
Query: 685 PPXXGGXXPPXX---GXPPPPPP 626
PP GG PP G PPPPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPP 774
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G P G PPPPPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPP 732
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPP 747
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 744 PPPPPGGLPPISGGPPPPPP 763
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG P G PPPPPP
Sbjct: 729 PPPPGGLPPITGGPPPPPPP 748
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG P G PPPPPP
Sbjct: 745 PPPPGGLPPISGGPPPPPPP 764
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Frame = -3
Query: 685 PPXXGGXXPPXX---GXPPPPPP 626
PP GG PP G PPPPPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPP 774
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G P G PPPPPP
Sbjct: 713 PPPPPGLPPITGGPPPPPPP 732
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPP 330
Score = 33.5 bits (73), Expect = 0.17
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPPP
Sbjct: 327 PPPPPGGLPPISGGPPPPPP 346
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG P G PPPPPP
Sbjct: 312 PPPPGGLPPITGGPPPPPPP 331
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP GG P G PPPPPP
Sbjct: 328 PPPPGGLPPISGGPPPPPPP 347
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Frame = -3
Query: 685 PPXXGGXXPPXX---GXPPPPPP 626
PP GG PP G PPPPPP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPP 357
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G P G PPPPPP
Sbjct: 296 PPPPPGLPPITGGPPPPPPP 315
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +2
Query: 347 PRKTFWGPXLVIXXNRGGXPXGGETPXXPXXFXKGXPPPGXXXGGXXPP 493
P+ +F+ P V P G P P F G PPP GG PP
Sbjct: 59 PKPSFFIPPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = -3
Query: 685 PPXXGGXXPPXX--GXPPPPPP 626
PP GG PP G PPPPPP
Sbjct: 98 PPMMGGIPPPPPMFGAPPPPPP 119
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/91 (30%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Frame = -1
Query: 573 PXGXPXAPXXXXLFXXXXPXFFXPKKRGGXXPPXLXPGGGXPX*KXXGXXGVSPPXGFPP 394
P G P P +F P P G P PG G P + G P PP
Sbjct: 691 PAGLP--PGVPPMFNLNAPP---PPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPP 745
Query: 393 RFXXITNXG--PQKVFRGNPXQXXXPPIPRG 307
F N G P RG PP PRG
Sbjct: 746 MFQQGFNAGAPPPPFGRGAGPMSSFPPPPRG 776
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPP PP
Sbjct: 1585 PPPLMGGPPPRLGMPPPGPP 1604
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 760 PPXXXXXXGGXXXXKXXXXXXXXXXPPXXGGXXPPXXGXPPPPPP 626
PP GG PP G PP PPPPPP
Sbjct: 215 PPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPP---PPPPPPP 256
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 760 PPXXXXXXGGXXXXKXXXXXXXXXXPPXXGGXXPPXXGXPPPPPP 626
PP GG PP G PP PPPPPP
Sbjct: 201 PPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPP---PPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 760 PPXXXXXXGGXXXXKXXXXXXXXXXPPXXGGXXPPXXGXPPPPPP 626
PP GG PP G PP PPPPPP
Sbjct: 201 PPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPP---PPPPPPP 242
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPP
Sbjct: 290 PPPFGFFPPPPRGHFPPPPP 309
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 685 PPXXGGXXPPXXGXPPPPPP 626
PP G PP G PPPPP
Sbjct: 290 PPPFGFFPPPPRGHFPPPPP 309
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 302 WNPRGMGGXXXWXGFPRKTFWGPXLVIXXNRGGXPXGGET 421
WNP G FP + W P +++ N G P ET
Sbjct: 69 WNPDEFGNITLMH-FPGEMLWLPDIILYNNAHGSPWVSET 107
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP PP PPPPPP
Sbjct: 349 PPIISPPAPPPPPPPPPPPP 368
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP PP PPPPPP
Sbjct: 58 PPCPAQFCPPPPICPPPPPP 77
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 686 PPXXXGXXPPXXXXPPPPPP 627
PP PP PPPPPP
Sbjct: 68 PPICPPPPPPPMPCPPPPPP 87
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -3
Query: 661 PPXXGXPPPPPP 626
PP G PPPPPP
Sbjct: 583 PPMLGGPPPPPP 594
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,252
Number of Sequences: 27780
Number of extensions: 279986
Number of successful extensions: 3246
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1840
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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