Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_F01
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 673 GGXXPPXXGXPPPPPP 626
           GG  PP  G P PP P
Sbjct: 406 GGQLPPSAGAPMPPIP 421


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 673 GGXXPPXXGXPPPPPP 626
           G    P    PPPPPP
Sbjct: 333 GDSDTPPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 644  PPPPPPXXXKKKXXFFSXKK 585
            PPPPPP    +    F+  K
Sbjct: 1859 PPPPPPRNHDQNNSSFNDSK 1878



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 658  PXXGXPPPPPP 626
            P  G P PPPP
Sbjct: 1852 PVSGSPEPPPP 1862


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 155 VARSESIMRXQ*CCVFAFCRTSYSTSEEKXVTE 57
           V +++  +  + CC   F  T Y   + K VT+
Sbjct: 593 VGQAKKYVAGEQCCWHCFNCTQYQIRDHKDVTQ 625


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,032
Number of Sequences: 438
Number of extensions: 4851
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)