Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_E23
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   2.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 487 SHCSGGTSASAPSGRQGAGSDRNSRVP 407
           S CS GT++S  S      SDR++  P
Sbjct: 174 SECSLGTASSTSSTASSRNSDRSAGSP 200


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 222 TRLPPGAKIASPRVIRSERLRLQVPGGRPGEHARRLERDGAVPANRPDRNR 70
           +++PP A+    R+  + R   Q+P G      ++ E  G +    P+R R
Sbjct: 735 SQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQKKCEERGILFMPIPNRYR 785


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,496
Number of Sequences: 438
Number of extensions: 3836
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)