Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_E22
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 204 1e-53
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 204 2e-53
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 28 1.5
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 2.6
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.4
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 4.5
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.0
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 26 7.9
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 204 bits (498), Expect = 1e-53
Identities = 89/116 (76%), Positives = 105/116 (90%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 398
K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66 KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Score = 86.2 bits (204), Expect = 5e-18
Identities = 37/83 (44%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Frame = +3
Query: 603 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXKHLXK 782
+SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+NGG++ DKV+WA +H K
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 783 PIPVDSVFXQXK*LTAL-VSQGQ 848
+ + S F Q + + + V++G+
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGK 224
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 204 bits (497), Expect = 2e-53
Identities = 88/116 (75%), Positives = 105/116 (90%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 398
K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 66 KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Score = 86.2 bits (204), Expect = 5e-18
Identities = 37/83 (44%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Frame = +3
Query: 603 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXKHLXK 782
+SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+NGG++ DKV+WA +H K
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 783 PIPVDSVFXQXK*LTAL-VSQGQ 848
+ + S F Q + + + V++G+
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGK 224
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = -1
Query: 501 PSSLIVERRLLGNYMHKVTYSRHINKALIFREESSFCRSDVDSLQT 364
P++ + ++LGNY+ +T+ ++ A F E +C+ + + T
Sbjct: 580 PTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQGIHMIPT 624
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -2
Query: 212 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 45
F N VG G+I D S + +R+VF D +G L ++SH +P V IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 39 RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 158
++E QHP +M FY + + G FP++ KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 30 PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 206
P C H + S +P + G K FP D+P S P+ + G T +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350
Query: 207 REPDRPGSKI 236
+ P++ +I
Sbjct: 351 KVPEKSNKEI 360
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 642 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 752
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 470 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 345
++T+C T + + LSS E FV +T + F + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,514,539
Number of Sequences: 5004
Number of extensions: 72407
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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