Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_E09
(854 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.014
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 31 0.018
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 30 0.024
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 30 0.024
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 30 0.031
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 30 0.031
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 28 0.095
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 27 0.29
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 26 0.38
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 26 0.51
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.89
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.89
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.89
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.89
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.89
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.89
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.89
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.89
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 24 1.6
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 23 3.6
AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8 ... 22 8.3
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 31.1 bits (67), Expect = 0.014
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +3
Query: 318 PXERLWRPDVXL-XHAAATTGGDXXXRARVSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQ 494
P + +WRPD+ L +A +A V G W P + ++ P D+Q
Sbjct: 106 PSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPYDVQ 165
Query: 495 TCTCR 509
TC +
Sbjct: 166 TCVLK 170
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 30.7 bits (66), Expect = 0.018
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +3
Query: 318 PXERLWRPDVXL-XHAAATTGGDXXXRARVSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQ 494
P + +WRPD+ L +A +A + + G W P + + P D Q
Sbjct: 106 PSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQ 165
Query: 495 TCTCR 509
TC +
Sbjct: 166 TCVLK 170
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 30.3 bits (65), Expect = 0.024
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +3
Query: 318 PXERLWRPDVXL-XHAAATTGGDXXXRARVSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQ 494
P + +WRPD+ L +A +A ++ G W P + + P D Q
Sbjct: 102 PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQ 161
Query: 495 TCTCR 509
TC +
Sbjct: 162 TCVMK 166
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 30.3 bits (65), Expect = 0.024
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +3
Query: 312 WCPXERLWRPDVXL-XHAAATTGGDXXXRARVSNXGSXSWXPRLDXXTPIAMXXHXRPXD 488
+ P E +W PD+ L +A G +A + G W P + + P D
Sbjct: 96 YVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFD 155
Query: 489 MQTC 500
QTC
Sbjct: 156 QQTC 159
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 29.9 bits (64), Expect = 0.031
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +3
Query: 324 ERLWRPDVXLXHAAATTGGDXXXR---ARVSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQ 494
E++W PD + + D R R+S GS ++ R M H P D Q
Sbjct: 114 EKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTLACMMDLHYYPLDSQ 173
Query: 495 TCT 503
CT
Sbjct: 174 NCT 176
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 29.9 bits (64), Expect = 0.031
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = +3
Query: 294 GAAALGWCPXERLWRPDVXL-XHAAATTGGDXXXRARVSNXGSXSWXPRLDXXTPIAMXX 470
G + + P E +W PD+ L +A +A + G SW P + +
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCEINV 162
Query: 471 HXRPXDMQTC 500
P D Q+C
Sbjct: 163 EYFPFDEQSC 172
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 28.3 bits (60), Expect = 0.095
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 324 ERLWRPDVXL---XHAAATTGGDXXXRARVSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQ 494
ER+WRPD H+ T R+S G + RL M P D Q
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 495 TC 500
+C
Sbjct: 175 SC 176
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 26.6 bits (56), Expect = 0.29
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 PXERLWRPDVXLXHAA-ATTGGDXXXRARVSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQ 494
P RLW+PDV + ++A G V N G+ + P + + P D Q
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDDQ 160
Query: 495 TC 500
C
Sbjct: 161 RC 162
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 26.2 bits (55), Expect = 0.38
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Frame = +3
Query: 318 PXERLWRPDVXL-XHAAATTGGDXXXRARVSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQ 494
P E +W PD+ L +A +A + + G W P + + P D Q
Sbjct: 98 PSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQ 157
Query: 495 TC 500
TC
Sbjct: 158 TC 159
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.8 bits (54), Expect = 0.51
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +3
Query: 318 PXERLWRPDVXLXHAAATTGGDXXXRAR----VSNXGSXSWXPRLDXXTPIAMXXHXRPX 485
P +++W+PD+ L + A G+ R + + G W P + + P
Sbjct: 104 PPDKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPF 160
Query: 486 DMQTC 500
D QTC
Sbjct: 161 DQQTC 165
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 202 NIRESESTVRXXAXLXMNWIDXRLIWNAXRVG 297
++ E + A L + W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.7
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 RLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQTC 500
+LW+PD+ L + +A G D + V++ GS + P + M P D Q C
Sbjct: 67 KLWKPDI-LMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHC 125
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 202 NIRESESTVRXXAXLXMNWIDXRLIWNAXRVG 297
++ E + A L + W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 RLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQTC 500
+LW+PD+ L + +A G D + V++ GS + P + + P D Q C
Sbjct: 67 KLWKPDI-LMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHC 125
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 202 NIRESESTVRXXAXLXMNWIDXRLIWNAXRVG 297
++ E + A L + W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 RLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQTC 500
+LW+PD+ L + +A G D + V++ GS + P + + P D Q C
Sbjct: 67 KLWKPDI-LMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHC 125
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 202 NIRESESTVRXXAXLXMNWIDXRLIWNAXRVG 297
++ E + A L + W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 RLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQTC 500
+LW+PD+ L + +A G D + V++ GS + P + + P D Q C
Sbjct: 67 KLWKPDI-LMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHC 125
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 202 NIRESESTVRXXAXLXMNWIDXRLIWNAXRVG 297
++ E + A L + W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 23.4 bits (48), Expect = 2.7
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 RLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQTC 500
+LW+PD+ L + +A G D + V++ GS + P + M P D Q C
Sbjct: 67 KLWKPDI-LMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHC 125
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 202 NIRESESTVRXXAXLXMNWIDXRLIWNAXRVG 297
++ E + A L + W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 21.8 bits (44), Expect = 8.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 RLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQTC 500
+LW+PD+ L + +A G D + V++ GS + P + + P D Q C
Sbjct: 67 KLWKPDI-LMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 125
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 202 NIRESESTVRXXAXLXMNWIDXRLIWNAXRVG 297
++ E + A L + W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 22.2 bits (45), Expect = 6.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 RLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQTC 500
+LW+PD+ L + +A G D + V++ GS + P + + P D Q C
Sbjct: 135 KLWKPDI-LMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 193
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.0 bits (52), Expect = 0.89
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 202 NIRESESTVRXXAXLXMNWIDXRLIWNAXRVG 297
++ E + A L + W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 22.2 bits (45), Expect = 6.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 327 RLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDMQTC 500
+LW+PD+ L + +A G D + V++ GS + P + + P D Q C
Sbjct: 135 KLWKPDI-LMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 193
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.2 bits (50), Expect = 1.6
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Frame = +3
Query: 318 PXERLWRPDVXLXHAAATTGGDXXXRAR--VSNXGSXSWXPRLDXXTPIAMXXHXRPXDM 491
P R+WRPD L + A VS+ G W + + P D
Sbjct: 83 PYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDE 142
Query: 492 QTCTCR 509
Q C +
Sbjct: 143 QRCVLK 148
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/32 (28%), Positives = 14/32 (43%)
Frame = +1
Query: 190 LRHANIRESESTVRXXAXLXMNWIDXRLIWNA 285
++H N+ E TV L + W L W +
Sbjct: 68 IQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKS 99
>AF080430-1|AAC28863.2| 208|Apis mellifera ribosomal protein S8
protein.
Length = 208
Score = 21.8 bits (44), Expect = 8.3
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 357 HAAATTGGDXXXRARVSNXGSXSW 428
H T GG+ RA + G+ SW
Sbjct: 44 HTVRTRGGNKKYRALRLDTGNFSW 67
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,389
Number of Sequences: 438
Number of extensions: 1964
Number of successful extensions: 35
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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