Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_E08
(811 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 46 5e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 41 1e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 4e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 39 6e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 38 1e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 37 2e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 35 0.001
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 34 0.002
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 33 0.002
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 31 0.017
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 29 0.067
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 27 0.16
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.7
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 45.6 bits (103), Expect = 5e-07
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA---NIRESEST 253
I SA C + D LL+ Y+R P S +VV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 254 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVV 376
+ L+ W D + W+ E+G T L V SE +W PD+V
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIV 108
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 44.4 bits (100), Expect = 1e-06
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESESTVRILADLQ 277
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 376
+ W L+W + E+ ++ V S +W PD+V
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 41.1 bits (92), Expect = 1e-05
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESESTVRILADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGEWGCSTWLVSSERLWRPD 370
+D+RL++ G+ + + R+W+PD
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPD 89
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 41.1 bits (92), Expect = 1e-05
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRH---ANIRES 244
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 245 ESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVV 376
T + ++ W D +L WN ++G T V SE +W PD+V
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIV 108
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 39.5 bits (88), Expect = 4e-05
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLR-------HANIRESESTVRILAD 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVV 376
++ +W D +L W+ E+G L V S+ +WRPD+V
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIV 112
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 38.7 bits (86), Expect = 6e-05
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVV 376
WN E+G L V SE +W PD+V
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIV 121
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.5 bits (83), Expect = 1e-04
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLWRPDVV 376
WN E+ G ++ +LW+PD++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDIL 142
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 37.5 bits (83), Expect = 1e-04
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ ++ E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLWRPDVV 376
WN E+ G ++ +LW+PD++
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDIL 142
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.5 bits (83), Expect = 1e-04
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVV 376
W E+G L V S+ +WRPD+V
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIV 116
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.5 bits (83), Expect = 1e-04
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVV 376
W E+G L V S+ +WRPD+V
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIV 116
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 37.1 bits (82), Expect = 2e-04
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 230 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 376
++ E + A L++ W+D L WN E+ G ++ +LW+PD++
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDIL 74
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 194 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 370
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 371 VV 376
+
Sbjct: 92 TI 93
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 33.9 bits (74), Expect = 0.002
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-NIRESESTV 256
A+A++ + +++ LL TY+ E P ++ +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVV 376
L++ W D + WN ++G L + RLW+PDV+
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVL 111
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 33.5 bits (73), Expect = 0.002
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 364
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 365 PDVV 376
PD+V
Sbjct: 111 PDIV 114
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 30.7 bits (66), Expect = 0.017
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAN-IRESESTVRILADLQMNWID 292
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 293 KRLSWNAGEWGCSTWLVSSERLWRPD 370
RLS+ S + ER+WRPD
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPD 121
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 28.7 bits (61), Expect = 0.067
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWRPD 370
D RL++ G T V SE +W PD
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPD 97
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 27.5 bits (58), Expect = 0.16
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWRPD 370
D RL++ G T V SE +W PD
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPD 97
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 337 PSAAAPFPCVPTQS 296
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,903
Number of Sequences: 438
Number of extensions: 2925
Number of successful extensions: 44
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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