Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_D21
(888 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.054
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.13
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.13
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.29
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 29 1.2
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace... 28 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.0
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 27 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 8.2
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 8.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.054
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = -3
Query: 775 PXPPXPPXX---PPPPPXPXXAXAXXPXXNXAPPP-TXXRXXAXAPAXXRSPAP 626
P PP P PPPPP P A A P PP + APA P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 29.1 bits (62), Expect = 0.88
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = -3
Query: 775 PXPPXPPXXPPPPPXPXXAXAXXPXXNXAPPPTXXRXXAXAPAXXRSPAP 626
P PP P P P P P PPP A A P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -2
Query: 782 ARAXXPXPPXXPPPPXXPXXGPRPGTXXEXXPAPXPXP 669
A A P PP P P P PG P P P P
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.13
Identities = 15/32 (46%), Positives = 15/32 (46%)
Frame = -3
Query: 775 PXPPXPPXXPPPPPXPXXAXAXXPXXNXAPPP 680
P PP PP PPPP A P APPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP---SAPPP 1733
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Frame = -2
Query: 767 PXPPXXPPPPXXPXXGPRPGTXXEXXPA-PXPXPR 666
P PP PP P P P P P+ P P R
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/61 (32%), Positives = 23/61 (37%)
Frame = -3
Query: 808 GRXTXGXGXHXPXPPXPPXXPPPPPXPXXAXAXXPXXNXAPPPTXXRXXAXAPAXXRSPA 629
G+ G G P PP PPP + P APPP R AP+ R P
Sbjct: 323 GKPPIGNGSSNSSLPPPP--PPPRSNAAGSIPLPPQGRSAPPPPPPR---SAPSTGRQPP 377
Query: 628 P 626
P
Sbjct: 378 P 378
Score = 30.7 bits (66), Expect = 0.29
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = -3
Query: 769 PPXPPXXPPPPPXPXXAXAXXPXXNXAPPPTXXRXXAXAPA 647
PP PP P PP P A P AP P A APA
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP--APAPAPA 485
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = -3
Query: 769 PPXPPXXPPPPPXPXXAXAXXPXXNXAPPPTXXRXXAXAPAXXRSPAP 626
P PP PP P A P PP A P +PAP
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -2
Query: 782 ARAXXPXPPXXPPPPXXPXXGPRPGTXXEXXPAPXPXP 669
A A P PP P P P P PAP P P
Sbjct: 443 APAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = -3
Query: 769 PPXPPXXPPPPPXPXXAXAXXPXXNXAPPPTXXRXXAXAPAXXRSPAP 626
P P P PP P A P P A AP +PAP
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = -3
Query: 835 PRXXXXSAXGRXTXGXGXHXPXPPXPPXXPPPPPXPXXAXAXXPXXNXAPPP 680
P SA G P PP P PP P A P APPP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG-MPAAPPLPPAAPAPPP 478
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.29
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Frame = -3
Query: 769 PPXP-PXXPPPPPXPXXAXAXXPXXNXAPP---PTXXRXXAXAPAXXRSPAP 626
PP P P PP P P A P + APP P+ AP+ P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = -3
Query: 769 PPXP-PXXPPPPPXPXXAXAXXPXXNXAPPPTXXRXXAXAPAXXRSPAP 626
PP P P PP P P A P + PP P S AP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/50 (34%), Positives = 18/50 (36%)
Frame = -3
Query: 775 PXPPXPPXXPPPPPXPXXAXAXXPXXNXAPPPTXXRXXAXAPAXXRSPAP 626
P P P PP P P A P + A PP A P S AP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGA-PPVPKPSVAAPPVPVPSGAP 1140
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = -3
Query: 769 PPXP-PXXPPPPPXPXXAXAXXPXXNXAPP-PTXXRXXAXAPAXXRSP 632
PP P P PP P P A P + APP P PA +P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Frame = -3
Query: 769 PPXPPXXPPPPPXPXXAXAXXPXXNXAPP-PTXXRXXAXAPAXXRSPAP 626
P PP PP P P P + APP PT P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Frame = -3
Query: 769 PPXP-PXXPPPPPXPXXAXAXXPXXNXAPPP 680
PP P P PP P P A P + A PP
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 240 VRVHRADTGRSSNELDRQTAELERRGMGL-QHLAG 341
+R H+ GR+ ELDR+ +L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
N-acetylglucosaminyltransferase Alg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 164 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNR 66
Y ES + D+ + SH+ A +I Q R+G R
Sbjct: 63 YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 760 PPXXPPPPPXPXXAXAXXPXXNXAPPP 680
PP PPPPP P P PPP
Sbjct: 5 PPGNPPPPPPP---PGFEPPSQPPPPP 28
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = -3
Query: 775 PXPPX--PPXXPPPPPXP 728
P PP PP PPPPP P
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/48 (31%), Positives = 17/48 (35%)
Frame = -3
Query: 781 HXPXPPXPPXXPPPPPXPXXAXAXXPXXNXAPPPTXXRXXAXAPAXXR 638
H P PP PPP P A + PPP A + A R
Sbjct: 95 HNPMPPMSQAYRPPPTEPPTVPA-YETSSEFPPPAYPEAAATSDAAFR 141
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -3
Query: 775 PXPPXPPXXPPPPPXPXXAXAXXPXXNXAPP-PTXXRXXAXAPAXXRSP 632
P PP PPP P A P + APP P+ A A +SP
Sbjct: 139 PPTSAPPRPSIPPPSPASA---PPIPSKAPPIPSSLPPPAQPAAPVKSP 184
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/30 (33%), Positives = 12/30 (40%)
Frame = -3
Query: 769 PPXPPXXPPPPPXPXXAXAXXPXXNXAPPP 680
P P PPPPP + P + PP
Sbjct: 412 PARPTESPPPPPISSSSTTPRPDDKPSLPP 441
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 46 MSTTYIILLPFLLTCAIASAAECENATSLS 135
+S TYIILLPF C A +++ +S
Sbjct: 1023 LSKTYIILLPFQSLCPGGKQANHQSSEKMS 1052
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.2 bits (45), Expect(2) = 9.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -3
Query: 775 PXPPXPPXXPP 743
P PP PP PP
Sbjct: 238 PPPPPPPTLPP 248
Score = 21.4 bits (43), Expect(2) = 9.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -3
Query: 766 PXPPXXPPPPPXP 728
P PP P PP P
Sbjct: 273 PPPPATPSQPPRP 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,222
Number of Sequences: 5004
Number of extensions: 52960
Number of successful extensions: 356
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -