Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_D15
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 79 1e-15
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 34 0.030
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 31 0.28
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 30 0.37
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 29 0.85
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 28 1.5
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.5
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 28 2.0
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 2.0
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 2.6
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 27 3.4
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce... 27 3.4
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.0
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 6.0
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 6.0
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 7.9
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 26 7.9
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 78.6 bits (185), Expect = 1e-15
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Frame = +1
Query: 160 EAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDLLRVVFT-D 336
E +E C +C + + Y + C+H +C C+ R+R L EC C+ + V+ T D
Sbjct: 73 EQDEDEQICFICAEGITYSCVLPCNHRMCHVCALRLRALYKTKECTFCKTEWDTVLITKD 132
Query: 337 SIHPYKELGNRECPDRLFERQYKIVFCSEDIKNAYENLLENRCK--ICDKIPPFRNFSLL 510
++ + P + + + IV+ E + LL+ C CD + + L
Sbjct: 133 HEIDIHDVDLAKLPFQ--DEKLGIVYSDEHAQEESNLLLQFNCPEDACDIT--CKGWFDL 188
Query: 511 NDHMRRVHERFFCDLCVNHLKIFTNERRCYTRQELAHHRRKGD 639
H + H +FFCDLCV + K+FT+E ++++ L H GD
Sbjct: 189 KLHAKVKHHKFFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGD 231
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 650 TSHRGHPLCEFCEKRF 697
T +GHP CEFC F
Sbjct: 239 TGFKGHPKCEFCNTHF 254
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 33.9 bits (74), Expect = 0.030
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Frame = +1
Query: 109 YRNAFTES*INNTTIMSEAQANENTCVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQN 288
Y A E ++ ++ E + E C +CF + + C H C C M+ L
Sbjct: 145 YETAVAEF-LHMEDLLQENVSRELECQICFGMLYDPVVSPCGHTFCGPC--LMQALTQSP 201
Query: 289 ECPICRKDLLRVVFTD--SIHPYKELGNRECPDRLFERQ 399
+CP CR L V + H PD ERQ
Sbjct: 202 QCPTCRFGLPSPVVLEHAKSHSITTFLRDFYPDNWLERQ 240
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 160 EAQANENTCVVCF-KNVLYYSIGECDHPVCFEC 255
E +E TC +C+ + L + ECDH C C
Sbjct: 123 EVVHHEGTCEICYDEGCLPFFSAECDHEFCLAC 155
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 228 LAN*VVQNVLETNYASILVRLSLRHDCCI 142
LA VVQNVL N +S+LV+ + R+ CI
Sbjct: 312 LAEPVVQNVLWVNTSSVLVQFTNRNSTCI 340
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.1 bits (62), Expect = 0.85
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +1
Query: 151 IMSEAQANENTCVVCFKNVLYYSIGECDHPVCFEC-STRMRVLCLQNECPICRK 309
+ S + + CV+C + S C H C C + + +CP+CR+
Sbjct: 195 VPSSQRLADYKCVICLDSPENLSCTPCGHIFCNFCILSALGTTAATQKCPVCRR 248
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 28.3 bits (60), Expect = 1.5
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Frame = +1
Query: 118 AFTES*INNTTIMSEAQANENTCVVCFKN---VLYYSIGEC-DHPVCFECSTRMRVLCLQ 285
A+ E IN + A+ E V N +L+ S+GE D + F CS+ +R+L +
Sbjct: 334 AYHEEEINPDNTIYRAKWEEYFGGVILHNAFFILHVSLGEVPDFHLLFHCSSDVRILQVV 393
Query: 286 NECPICRKDLL-----RVVFTDSIHPYKEL 360
NE + + V++ D HP K L
Sbjct: 394 NESMPIKSEFFILTTESVLWMDIQHPQKPL 423
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 184 CVVCFKNVLYYSIGECDHPVCFECSTRMRVLCLQNECPICRKDL 315
C +C + + C H C+EC + L CP CR+ L
Sbjct: 85 CPICTEALQRPFTTHCGHTYCYEC--LLNWLKESKSCPTCRQKL 126
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 145 TTIMSEAQANENTCVVCFKNVLYYSIGE-----CDHPVCFECSTRMR 270
TT ++ AN C +CF LYY C P+C EC +R
Sbjct: 138 TTAITTIYANAMECPICF---LYYPSNFNYTRCCAQPICSECFVEIR 181
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +1
Query: 73 ASTYSQFNKTLGYRNAFTES*INNTTIMSEA--QANENTCVVCFKNVLYYSIGECDHPVC 246
A+ F++ G+R NN + ++TC +C + +C+ VC
Sbjct: 45 AAVKEAFSENRGFRTCHVCHRKNNMRLKVGTCESCKKHTCAICIRQC-----HKCESNVC 99
Query: 247 FECSTRMRVLCLQNECPIC 303
CS + R + CP C
Sbjct: 100 SMCSKQERTFESEAFCPSC 118
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = -3
Query: 654 EVPFKVTFTSMMCQFLSCITPSFIGKNLQMINTKVTKKPFMNPSHVIIQQTKVAERWYLI 475
+V F +F+ Q + + PSF+ L I K+ KP +P + T+ + + +
Sbjct: 558 QVGFDDSFSGDDKQVVDVVAPSFVIPRLDDILNKIADKPLYSPDDWELYFTR-PDGKHSM 616
Query: 474 TDFTPI 457
TD P+
Sbjct: 617 TDLLPL 622
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 593 GVIHDKNWHIIDVKVTLNGTSH 658
G+++D H+ID +TL GT H
Sbjct: 176 GLVYDLGSHLIDQAITLFGTPH 197
>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 596 VIHDK-NWHIIDVKVTLNGTSHRGHPLCEFCEKRFMG 703
V+HD+ + VK+ L G SHRGH C++ F+G
Sbjct: 112 VVHDELELDLGKVKLRLPGGSHRGHNGIRSCQE-FLG 147
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +1
Query: 175 ENTCVVCFKNVLYYS----IGECDHPVCFECSTRMRVLCLQNECPICR 306
+ C+VC N + +C+H EC + + QN CP+CR
Sbjct: 522 DERCLVCLSNFELNDECRRLKQCNHFFHRECIDQW-LTSSQNSCPLCR 568
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = -1
Query: 527 LLM*SFSKLKLRNGGILSQILHRFSN------KFSYAFFMSSEQN 411
+L+ + L NGGI+ Q+L SN KF+ FF++ + N
Sbjct: 79 VLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQPN 123
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Frame = +1
Query: 226 ECDHPVCFECSTRMRVLCLQNECPICR 306
+C H C+ C L CPIC+
Sbjct: 212 DCGHTYCYACIMSRLKLVNNVSCPICK 238
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 408 NFVLSFKQSIRAFPVPKLLVGMNRISKYNPQ*IFTTYRTLILKTEHPHPSRALET 244
+F FK+ + A + ++ ++R +P+ + T T ++ T H SRA +T
Sbjct: 49 SFAREFKELVAAHGLKGIIQSLHR-DYDDPELLKVTLETCLILTRHDDDSRASDT 102
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 7.9
Identities = 20/76 (26%), Positives = 33/76 (43%)
Frame = -3
Query: 618 CQFLSCITPSFIGKNLQMINTKVTKKPFMNPSHVIIQQTKVAERWYLITDFTPILQ*VFI 439
C FL+ + K L+ I K N + ++ +QTK RW + +T + +
Sbjct: 93 CIFLATKVEDSVRK-LRDIVINCAKVAQKNSNVLVDEQTKEYWRWRDVILYTEEVLLEAL 151
Query: 438 CIFYVFRTEYNFVLSF 391
C + Y +VLSF
Sbjct: 152 CFDFTVEHPYPYVLSF 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,537,527
Number of Sequences: 5004
Number of extensions: 74480
Number of successful extensions: 229
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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